Evidence map›Paper›PMID 20363740›Full record

ArticleThe Journal of biological chemistry2010

Structure of Shigella IpgB2 in complex with human RhoA: implications for the mechanism of bacterial guanine nucleotide exchange factor mimicry.

Björn U Klink, Stephan Barden, Thomas V Heidler, Christina Borchers, Markus Ladwein, Theresia E B Stradal, Klemens Rottner, Dirk W Heinz

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. ThemSphere · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. eLife · 2017
    Article
  9. How Do the Virulence Factors ofFrontiers in cellular and infection microbiology · 2017
    Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. The inside story of Shigella invasion of intestinal epithelial cells.Cold Spring Harbor perspectives in medicine · 2013
    Review
  16. Article
  17. Subversion of cell signaling by pathogens.Cold Spring Harbor perspectives in biology · 2012
    Review
  18. Review
  19. Manipulation of host membranes by bacterial effectors.Nature reviews. Microbiology · 2011
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Björn U KlinkDivision of Structural Biology, Helmholtz Zentrum für Infektionsforschung, D-38124 Braunschweig, Germany.
Stephan Barden
Thomas V Heidler
Christina Borchers
Markus Ladwein
Theresia E B Stradal
Klemens Rottner
Dirk W Heinz
Helmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A common theme in bacterial pathogenesis is the manipulation of eukaryotic cells by targeting the cytoskeleton. This is in most cases achieved either by modifying actin, or indirectly via activation of key regulators controlling actin dynamics such as Rho-GTPases. A novel group of bacterial virulence factors termed the WXXXE family has emerged as guanine nucleotide exchange factors (GEFs) for these GTPases. The precise mechanism of nucleotide exchange, however, has remained unclear. Here we report the structure of the WXXXE-protein IpgB2 from Shigella flexneri and its complex with human RhoA. We unambiguously identify IpgB2 as a bacterial RhoA-GEF and dissect the molecular mechanism of GDP release, an essential prerequisite for GTP binding. Our observations uncover that IpgB2 induces conformational changes on RhoA mimicking DbI- but not DOCK family GEFs. We also show that dissociation of the GDP.Mg(2+) complex is preceded by the displacement of the metal ion to the alpha-phosphate of the nucleotide, diminishing its affinity to the GTPase. These data refine our understanding of the mode of action not only of WXXXE GEFs but also of mammalian GEFs of the DH/PH family.

Indexed as

Cloning, MolecularCytoskeletonGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateHumansIonsMagnesiumMetalsNucleotidesProtein BindingProtein Conformationrac1 GTP-Binding ProteinrhoA GTP-Binding ProteinShigella flexneriGuanine Nucleotide Exchange FactorsGuanosine DiphosphateGuanosine TriphosphateIonsIpgB2 protein, Shigella flexneriMagnesiumMetalsNucleotidesrac1 GTP-Binding ProteinrhoA GTP-Binding ProteinRHOA protein, human

Identifiers

PMID20363740
PMCPMC2878080
OpenAlexW1989317195

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.