Evidence map›Paper›PMID 20362316›Full record

ArticleVirology2010

An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus.

Anindya Bandyopadhyay, Kristin Kopperud, Gavin Anderson, Kathleen Martin, Michael Goodin

Abstract read
In one paragraph

Article in Virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 69 citations in OpenAlex.

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  13. Exploration of anFrontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anindya BandyopadhyayDepartment of Plant Pathology, University of Kentucky, Lexington, KY, USA.
Kristin Kopperud
Gavin Anderson
Kathleen Martin
Michael Goodin
University of Kentucky · US

Funding

Rhabdovirus phosphoproteins: RNA silencing and complex formationR03AI068934 · NIAID · UNIVERSITY OF KENTUCKY · PI GOODIN, MICHAEL M · 2007 to 2008
$135k
NIAID NIH HHS R03 AI068934
6 · The paper itself

Abstract

The genome of Potato yellow dwarf virus (PYDV; Nucleorhabdovirus type species) was determined to be 12,875 nucleotides (nt). The antigenome is organized into seven open reading frames (ORFs) ordered 3'-N-X-P-Y-M-G-L-5', which likely encode the nucleocapsid, phospho, movement, matrix, glyco and RNA-dependent RNA polymerase proteins, respectively, except for X, which is of unknown function. The ORFs are flanked by a 3' leader RNA of 149 nt and a 5' trailer RNA of 97 nt, and are separated by conserved intergenic junctions. Phylogenetic analyses indicated that PYDV is closely related to other leafhopper-transmitted rhabdoviruses. Functional protein assays were used to determine the subcellular localization of PYDV proteins. Surprisingly, the M protein was able to induce the intranuclear accumulation of the inner nuclear membrane in the absence of any other viral protein. Finally, bimolecular fluorescence complementation was used to generate the most comprehensive protein interaction map for a plant-adapted rhabdovirus to date.

Indexed as

Protein Interaction Mapping3' Untranslated Regions5' Untranslated RegionsCell NucleusCluster AnalysisCytoplasmDNA, IntergenicGene OrderGenome, ViralMicroscopy, ConfocalMolecular Sequence DataNicotianaNuclear EnvelopeOpen Reading FramesPhylogenyProtein Binding3' Untranslated Regions5' Untranslated RegionsDNA, IntergenicRNA, ViralViral Proteins

Identifiers

PMID20362316
PMCPMC2873121
OpenAlexW2011350993

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.