Evidence map›Paper›PMID 20361982›Full record

ArticleJournal of molecular biology2010

The Tiam1 PDZ domain couples to Syndecan1 and promotes cell-matrix adhesion.

Tyson R Shepherd, Suzi M Klaus, Xu Liu, S Ramaswamy, Kris A DeMali, Ernesto J Fuentes

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 51 citations in OpenAlex.

  1. Targeting syndecan-1: new opportunities in cancer therapy.American journal of physiology. Cell physiology · 2022
    Review
  2. Computational Design of PDZ-Peptide Binding.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  3. A Fluorescence-Based Assay to Determine PDZ-Ligand Binding Thermodynamics.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  4. The Journal of international medical research · 2020
    Article
  5. Article
  6. Article
  7. The Cardiac Syndecan-2 Interactome.Frontiers in cell and developmental biology · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Emerging Themes in PDZ Domain Signaling: Structure, Function, and Inhibition.International review of cell and molecular biology · 2019
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tyson R ShepherdUniversity of Iowa, Department of Biochemistry, Roy J. and Lucille A. Carver College of Medicine, 4-632 Bowen Science Building, Iowa City, IA 52242-1109, USA.
Suzi M Klaus
Xu Liu
S Ramaswamy
Kris A DeMali
Ernesto J Fuentes
University of Iowa · USUniversity of Iowa Holden Comprehensive Cancer Center

Funding

PREDOCTORAL TRAINING PROGRAM IN BIOTECHNOLOGYT32GM008365 · NIGMS · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 1990 to 2021
$3.8M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
NCI NIH HHS Y1-CO-1020NIGMS NIH HHS T32 GM008365NIGMS NIH HHS T32 GM067795NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

The T-cell lymphoma invasion and metastasis gene 1 (Tiam1) is a guanine exchange factor (GEF) for the Rho-family GTPase Rac1 that is crucial for the integrity of adherens junctions, tight junctions, and cell-matrix interactions. This GEF contains several protein-protein interaction domains, including a PDZ domain. Earlier studies identified a consensus PDZ-binding motif and a synthetic peptide capable of binding to the Tiam1 PDZ domain, but little is known about its ligand specificity and physiological role in cells. Here, we investigated the structure, specificity, and function of the Tiam1 PDZ domain. We determined the crystal structures of the Tiam1 PDZ domain free and in complex with a "model" peptide, which revealed the structural basis for ligand specificity. Protein database searches using the consensus PDZ-binding motif identified two eukaryotic cell adhesion proteins, Syndecan1 and Caspr4, as potential Tiam1 PDZ domain binding proteins. Equilibrium binding experiments confirmed that C-terminal peptides derived from Syndecan1 and Caspr4 bound the Tiam1 PDZ domain. NMR chemical shift perturbation experiments indicated that the Tiam1 PDZ/Syndecan1 and PDZ/Caspr4 complexes were structurally distinct and identified key residues likely to be responsible for ligand selectivity. Moreover, cell biological analysis established that Syndecan1 is a physiological binding partner of Tiam1 and that the PDZ domain has a function in cell-matrix adhesion and cell migration. Collectively, our data provide insight into the structure, specificity, and function of the Tiam1 PDZ domain. Importantly, our data report on a physiological role for the Tiam1 PDZ domain and establish a novel link between two previously unrelated signal transduction pathways, both of which are implicated in cancer.

Indexed as

PDZ DomainsAmino Acid SequenceAnimalsCell LineCrystallography, X-RayDogsGuanine Nucleotide Exchange FactorsHumansModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, QuaternaryProtein Structure, TertiarySequence AlignmentSubstrate SpecificityGuanine Nucleotide Exchange FactorsSDC1 protein, humanSyndecan-1TIAM1 protein, humanT-Lymphoma Invasion and Metastasis-inducing Protein 1

Identifiers

PMID20361982
PMCPMC5489123
OpenAlexW2153007377

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.