Evidence map›Paper›PMID 20358421›Full record

ArticleTumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine2010

Identification of key genes for carcinogenic pathways associated with colorectal adenoma-to-carcinoma progression.

Anke H Sillars-Hardebol, Beatriz Carvalho, Meike de Wit, Cindy Postma, Pien M Delis-van Diemen, Sandra Mongera, Bauke Ylstra, Mark A van de Wiel, Gerrit A Meijer, Remond J A Fijneman

Open access · hybridAbstract read
In one paragraph

Article in Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
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  3. Evolvability of cancer-associated genes under APOBEC3A/B selection.bioRxiv : the preprint server for biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Anke H Sillars-HardebolDepartment of Pathology (Tumor Profiling Unit), VU University Medical Center, De Boelelaan 1117, 1081HV, Amsterdam, The Netherlands.
Beatriz Carvalho
Meike de Wit
Cindy Postma
Pien M Delis-van Diemen
Sandra Mongera
Bauke Ylstra
Mark A van de Wiel
Gerrit A Meijer
Remond J A Fijneman
Amsterdam UMC Location VUmc · NLUniversity Hospital and Clinics · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colorectal adenomas form a biologically and clinically distinct intermediate stage in development of colorectal cancer (CRC) from normal colon epithelium. Only 5% of adenomas progress into adenocarcinomas, indicating that malignant transformation requires other biological alterations than those involved in adenoma formation. The present study aimed to explore which cancer-related biological processes are affected during colorectal adenoma-to-carcinoma progression and to identify key genes within these pathways that can serve as tumor markers for malignant transformation. The activity of 12 cancer-related biological processes was compared between 37 colorectal adenomas and 31 adenocarcinomas, using the pathway analysis tool Gene Set Enrichment Analysis. Expression of six gene sets was significantly increased in CRCs compared to adenomas, representing chromosomal instability, proliferation, differentiation, invasion, stroma activation, and angiogenesis. In addition, 18 key genes were identified for these processes based on their significantly increased expression levels. For AURKA and PDGFRB, increased mRNA expression levels were verified at the protein level by immunohistochemical analysis of a series of adenomas and CRCs. This study revealed cancer-related biological processes whose activities are increased during malignant transformation and identified key genes which may be used as tumor markers to improve molecular characterization of colorectal tumors.

Indexed as

AdenomaAurora Kinase AAurora KinasesCarcinomaCell Cycle ProteinsCell Transformation, NeoplasticColorectal NeoplasmsDisease ProgressionHumansImmunohistochemistryPolo-Like Kinase 1Protein Serine-Threonine KinasesProto-Oncogene ProteinsReceptor, Platelet-Derived Growth Factor betaAURKA protein, humanAurora Kinase AAurora KinasesCell Cycle ProteinsPolo-Like Kinase 1Protein Serine-Threonine KinasesProto-Oncogene ProteinsReceptor, Platelet-Derived Growth Factor beta

Identifiers

PMID20358421
PMCPMC2848338
OpenAlexW2106089894

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.