Evidence map›Paper›PMID 20357097›Full record

ArticleJournal of virology2010

Autologous neutralizing antibodies to the transmitted/founder viruses emerge late after simian immunodeficiency virus SIVmac251 infection of rhesus monkeys.

Wendy W Yeh, Ishita Rahman, Peter Hraber, Rory T Coffey, Daiva Nevidomskyte, Ayush Giri, Mohammed Asmal, Svetlana Miljkovic, Marcus Daniels, James B Whitney and 6 more

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

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  5. TheFuture virology · 2020
    Review
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  11. Effects of neutralizing antibodies on escape from CD8+ T-cell responses in HIV-1 infection.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Wendy W YehDivision of Viral Pathogenesis, Department of Medicine, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts 02215, USA.
Ishita Rahman
Peter Hraber
Rory T Coffey
Daiva Nevidomskyte
Ayush Giri
Mohammed Asmal
Svetlana Miljkovic
Marcus Daniels
James B Whitney
Brandon F Keele
Beatrice H Hahn
Bette T Korber
George M Shaw
Michael S Seaman
Norman L Letvin
Harvard University · USBeth Israel Deaconess Medical Center · USLos Alamos National Laboratory · USUniversity of Alabama at Birmingham · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2005 to 2005
$14.9M
Multidisciplinary HIV Training ProgramT32AI007387 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Daniel R. Kuritzkes · 1990 to 2026
$8.8M
Cloning, characterization and in vivo testing of mucosally transmitted SIVR33AI087383 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2013 to 2015
$1.4M
Viral Constraints on SIV Escape from Cytotoxic T LymphocytesK08AI069995 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI YEH, WENDY WEN-LI · 2006 to 2010
$585k
Cloning, characterization and in vivo testing of mucosally transmitted SIVR21AI087383 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHAW, GEORGE M · 2010 to 2011
$413k
NIAID NIH HHS AI067854NIAID NIH HHS AI087383NIAID NIH HHS K08 AI069995NIAID NIH HHS K08-AI069995NIAID NIH HHS R21 AI087383NIAID NIH HHS R33 AI087383NIAID NIH HHS T32 AI007387NIAID NIH HHS U01 AI067854NIAID NIH HHS U19 AI067854
6 · The paper itself

Abstract

While the simian immunodeficiency virus (SIV)-infected rhesus monkey is an important animal model for human immunodeficiency virus type 1 (HIV-1) infection of humans, much remains to be learned about the evolution of the humoral immune response in this model. In HIV-1 infection, autologous neutralizing antibodies emerge 2 to 3 months after infection. However, the ontogeny of the SIV-specific neutralizing antibody response in mucosally infected animals has not been defined. We characterized the kinetics of the autologous neutralizing antibody response to the transmitted/founder SIVmac251 using a pseudovirion-based TZM-bl cell assay and monitored env sequence evolution using single-genome amplification in four rhesus animals that were infected via intrarectal inoculations. We show that the SIVmac251 founder viruses induced neutralizing antibodies at 5 to 8 months after infection. Despite their slow emergence and low titers, these neutralizing antibodies selected for escape mutants that harbored substitutions and deletions in variable region 1 (V1), V2, and V4 of Env. The neutralizing antibody response was initially focused on V4 at 5 to 8 months after infection and then targeted V1/V2 and V4 by 16 months. These findings reveal a striking delay in the development of neutralizing antibodies in SIVmac-infected animals, thus raising questions concerning the suitability of SIVmac251 as a challenge strain to screen AIDS vaccines that elicit neutralizing antibodies as a means to prevent virus acquisition. They also illustrate the capacity of the SIVmac quasispecies to modify antigenic determinants in response to very modest titers of neutralizing antibodies.

Indexed as

Amino Acid SequenceAnimalsAntibodies, NeutralizingAntibodies, ViralDisease Models, AnimalHIV-1HIV InfectionsHumansMacaca mulattaMolecular Sequence DataPhylogenySequence AlignmentSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusViral Envelope ProteinsAntibodies, NeutralizingAntibodies, ViralViral Envelope Proteins

Identifiers

PMID20357097
PMCPMC2876635
OpenAlexW2016548274

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.