Evidence map›Paper›PMID 20357053›Full record

ArticleGenome research2010

Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds.

Yuichiro Itoh, Kirstin Replogle, Yong-Hwan Kim, Juli Wade, David F Clayton, Arthur P Arnold

Abstract readComparative Study
In one paragraph

Article in Genome research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Overview of Avian Sex Reversal.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Dosage compensation inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. The timing of genetic degeneration of sex chromosomes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  16. Article
  17. Avian Primordial Germ Cells Are Bipotent for Male or Female Gametogenesis.Frontiers in cell and developmental biology · 2021
    Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yuichiro ItohDepartment of Integrative Biology and Physiology, University of California, Los Angeles, CA 90095-1606, USA.
Kirstin Replogle
Yong-Hwan Kim
Juli Wade
David F Clayton
Arthur P Arnold

Funding

Developmental Regulation of Brain and BehaviorR01MH055488 · NIMH · MICHIGAN STATE UNIVERSITY · PI WADE, JULI S. · 2001 to 2011
$3.0M
Songbird Neurogenomics InitiativeR01NS045264 · NINDS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CLAYTON, DAVID F · 2003 to 2010
$2.6M
NEURAL &HORMONAL BASES OF VOCALIZATIONR01DC000217 · NIDCD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARNOLD, ARTHUR P · 1989 to 2008
$2.4M
HORMONAL REGULATION OF BRAIN AND BEHAVIOR DEVELOPMENTR29MH055488 · NIMH · MICHIGAN STATE UNIVERSITY · PI WADE, JULI S. · 1996 to 2000
$103k
NIDCD NIH HHS DC00217NIDCD NIH HHS R01 DC000217NIMH NIH HHS MH55488NIMH NIH HHS R01 MH055488NIMH NIH HHS R29 MH055488NINDS NIH HHS R01 NS045264
6 · The paper itself

Abstract

We compared global patterns of gene expression between two bird species, the chicken and zebra finch, with regard to sex bias of autosomal versus Z chromosome genes, dosage compensation, and evolution of sex bias. Both species appear to lack a Z chromosome-wide mechanism of dosage compensation, because both have a similar pattern of significantly higher expression of Z genes in males relative to females. Unlike the chicken Z chromosome, which has female-specific expression of the noncoding RNA MHM (male hypermethylated) and acetylation of histone 4 lysine 16 (H4K16) near MHM, the zebra finch Z chromosome appears to lack the MHM sequence and acetylation of H4K16. The zebra finch also does not show the reduced male-to-female (M:F) ratio of gene expression near MHM similar to that found in the chicken. Although the M:F ratios of Z chromosome gene expression are similar across tissues and ages within each species, they differ between the two species. Z genes showing the greatest species difference in M:F ratio were concentrated near the MHM region of the chicken Z chromosome. This study shows that the zebra finch differs from the chicken because it lacks a specialized region of greater dosage compensation along the Z chromosome, and shows other differences in sex bias. These patterns suggest that different avian taxa may have evolved specific compensatory mechanisms.

Indexed as

Dosage Compensation, GeneticSex CharacteristicsAnimalsBirdsChickensChromosome MappingComparative Genomic HybridizationEvolution, MolecularFemaleFinchesGenomeHistonesMaleOligonucleotide Array Sequence AnalysisSex ChromosomesSpecies SpecificityHistones

Identifiers

PMID20357053
PMCPMC2847754

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.