Evidence map›Paper›PMID 20354198›Full record

ArticleThe Plant cell2010

SHORT HYPOCOTYL UNDER BLUE1 truncations and mutations alter its association with a signaling protein complex in Arabidopsis.

Yun Zhou, Min Ni

Abstract read
In one paragraph

Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. ThePlant direct · 2022
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yun ZhouDepartment of Plant Biology, University of Minesota, St. Paul, Minesota 55108, USA.
Min Ni

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Higher plants monitor their ambient light signals through red/far-red absorbing phytochromes and blue/UV-A light absorbing cryptochromes. Subsequent signaling cascades alter gene expression and initiate morphogenic responses. We previously isolated SHORT HYPOCOTYL UNDER BLUE1 (SHB1), a putative transcriptional coactivator in light signaling. SHB1 is homologous to the SYG1 protein family and contains an N-terminal SPX domain and a C-terminal EXS domain. Overaccumulation of the SPX domain caused a long hypocotyl phenotype similar to that of shb1-D under red, far-red, or blue light. By contrast, overaccumulation of the C-terminal EXS domain led to a short hypocotyl phenotype similar to that of shb1 under blue light. The N-terminal SPX domain was associated with a smaller protein complex than the native protein complex associated with endogenous SHB1. By contrast, the EXS domain was associated with a slightly smaller protein complex than the native protein complex, but it largely displaced endogenous SHB1 from its native protein complex. In addition, all six missense mutations that we identified from a suppressor screen were clustered within or close to the SPX domain, and these mutations impaired the assembly of the SHB1-containing protein complex. We propose that both SPX and EXS domains likely anchor SHB1 to a protein complex, and the SPX domain is critical for SHB1 signaling.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHypocotylMultiprotein ComplexesMutagenesis, Site-DirectedMutation, MissensePhenotypePlants, Genetically ModifiedProtein Interaction Domains and MotifsArabidopsis ProteinsMultiprotein ComplexesSHB1 protein, Arabidopsis

Identifiers

PMID20354198
PMCPMC2861450

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.