Evidence map›Paper›PMID 20352404›Full record

ArticleAntonie van Leeuwenhoek2010

Effect of bacterial inoculation, plant genotype and developmental stage on root-associated and endophytic bacterial communities in potato (Solanum tuberosum).

Fernando Dini Andreote, Ulisses Nunes da Rocha, Welington Luiz Araújo, João Lúcio Azevedo, Leonard Simon van Overbeek

Open access · hybridAbstract read
In one paragraph

Article in Antonie van Leeuwenhoek, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 129 citations in OpenAlex.

  1. Article
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  4. Assessment of soil bacterial communities in integrated crop production systems within the Amazon Biome, Brazil: a comparative study.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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  5. Endophytic bacterial community structure and diversity of the medicinal plant Mirabilis himalaica from different locations.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  6. Review
  7. Genomic Characterization ofPlants (Basel, Switzerland) · 2022
    Article
  8. Article
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  10. Defeating Huanglongbing PathogenFrontiers in plant science · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Frontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Fernando Dini AndreoteDepartamento de Ciência do Solo, Escola Superior de Agricultura Luiz de Queiroz, University of São Paulo, Avenida Pádua Dias 11, Piracicaba, SP, Brazil. fdandreo@gmail.com
Ulisses Nunes da Rocha
Welington Luiz Araújo
João Lúcio Azevedo
Leonard Simon van Overbeek
Secretaria de Agricultura e Abastecimento · BRUniversidade de Mogi das Cruzes · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beneficial bacteria interact with plants by colonizing the rhizosphere and roots followed by further spread through the inner tissues, resulting in endophytic colonization. The major factors contributing to these interactions are not always well understood for most bacterial and plant species. It is believed that specific bacterial functions are required for plant colonization, but also from the plant side specific features are needed, such as plant genotype (cultivar) and developmental stage. Via multivariate analysis we present a quantification of the roles of these components on the composition of root-associated and endophytic bacterial communities in potato plants, by weighing the effects of bacterial inoculation, plant genotype and developmental stage. Spontaneous rifampicin resistant mutants of two bacterial endophytes, Paenibacillus sp. strain E119 and Methylobacterium mesophilicum strain SR1.6/6, were introduced into potato plants of three different cultivars (Eersteling, Robijn and Karnico). Densities of both strains in, or attached to potato plants were measured by selective plating, while the effects of bacterial inoculation, plant genotype and developmental stage on the composition of bacterial, Alphaproteobacterial and Paenibacillus species were determined by PCR-denaturing gradient gel-electrophoresis (DGGE). Multivariate analyses revealed that the composition of bacterial communities was mainly driven by cultivar type and plant developmental stage, while Alphaproteobacterial and Paenibacillus communities were mainly influenced by bacterial inoculation. These results are important for better understanding the effects of bacterial inoculations to plants and their possible effects on the indigenous bacterial communities in relation with other plant factors such as genotype and growth stage.

Indexed as

BiodiversitySymbiosisColony Count, MicrobialDNA, BacterialDNA FingerprintingElectrophoresis, Polyacrylamide GelGenotypeMethylobacteriumMolecular Sequence DataNucleic Acid DenaturationPaenibacillusPlant RootsSequence Analysis, DNASolanum tuberosumDNA, Bacterial

Identifiers

PMID20352404
PMCPMC2847171
OpenAlexW2150316670

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.