ArticleMarine biotechnology (New York, N.Y.)2011
Transcriptome profiling of embryonic development rate in rainbow trout advanced backcross introgression lines.
Article in Marine biotechnology (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Functional Analysis of the Cyclin E Gene in the Reproductive Development of Rainbow Trout (Biology · 2025Article
- Comparing genomic signatures of domestication in two Atlantic salmon (Evolutionary applications · 2019Article
- Article
- Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression.Genetics, selection, evolution : GSE · 2016Article
- Transcriptional Profiling Reveals Differential Gene Expression of Amur Ide (Leuciscus waleckii) during Spawning Migration.International journal of molecular sciences · 2015Article
- Transcriptomic responses of Atlantic salmon (Salmo salar) to environmental enrichment during juvenile rearing.PloS one · 2015Article
- Microarray analysis of hepatic gene expression in juvenile Japanese flounder Paralichthys olivaceus fed diets supplemented with fish or vegetable oils.Marine biotechnology (New York, N.Y.) · 2014Article
- Involvement of JNK in the embryonic development and organogenesis in zebrafish.Marine biotechnology (New York, N.Y.) · 2013Article
- Gene expression changes leading extreme alkaline tolerance in Amur ide (Leuciscus waleckii) inhabiting soda lake.BMC genomics · 2013Article
- A consensus linkage map provides insights on genome character and evolution in common carp (Cyprinus carpio L.).Marine biotechnology (New York, N.Y.) · 2013Article
- Article
- Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill).Heredity · 2013Article
- Article
- Genetic diversity of the sulfotransferase-like gene and one nonsynonymous SNP associated with growth traits of clam, Meretrix meretrix.Molecular biology reports · 2012Article
- Transcriptomic analysis of the clam Meretrix meretrix on different larval stages.Marine biotechnology (New York, N.Y.) · 2012Article
- Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics.PloS one · 2012Article
- A conserved haplotype controls parallel adaptation in geographically distant salmonid populations.Molecular ecology · 2012Article
- Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads.BMC genomics · 2011Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In rainbow trout (Oncorhynchus mykiss) and other fishes, embryonic development rate is an ecologically and evolutionarily important trait that is closely associated with survival and physiological performance later in life. To identify genes differentially regulated in fast and slow-developing embryos of rainbow trout, we examined gene expression across developmental time points in rainbow trout embryos possessing alleles linked to a major quantitative trait loci (QTL) for fast versus slow embryonic development rate. Whole genome expression microarray analyses were conducted using embryos from a fourth generation backcross family, whereby each backcross generation involved the introgression of the fast-developing alleles for a major development rate QTL into a slow-developing clonal line of rainbow trout. Embryos were collected at 15, 19, and 28 days post-fertilization; sex and QTL genotype were determined using molecular markers, and cDNA from 48 embryos were used for microarray analysis. A total of 183 features were identified with significant differences between embryonic development rate genotypes. Genes associated with cell cycle growth, muscle contraction and protein synthesis were expressed significantly higher in embryos with the fast-developing allele (Clearwater) than those with the slow-developing allele (Oregon State University), which may associate with fast growth and early body mass construction in embryo development. Across time points, individuals with the fast-developing QTL allele appeared to have earlier onset of these developmental processes when compared to individuals with the slow development alleles, even as early as 15 days post-fertilization. Differentially expressed candidate genes chosen for linkage mapping were localized primarily to regions outside of the major embryonic development rate QTL, with the exception of a single gene (very low-density lipoprotein receptor precursor).
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