Evidence map›Paper›PMID 20352106›Full record

ArticlePloS one2010

4E10-resistant HIV-1 isolated from four subjects with rare membrane-proximal external region polymorphisms.

Kyle J Nakamura, Johannes S Gach, Laura Jones, Katherine Semrau, Jan Walter, Frederic Bibollet-Ruche, Julie M Decker, Laura Heath, William D Decker, Moses Sinkala and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 2 countries.

Kyle J NakamuraDepartment of Pediatrics, Childrens Hospital of Los Angeles, Los Angeles, California, United States of America.
Johannes S Gach
Laura Jones
Katherine Semrau
Jan Walter
Frederic Bibollet-Ruche
Julie M Decker
Laura Heath
William D Decker
Moses Sinkala
Chipepo Kankasa
Donald Thea
James Mullins
Louise Kuhn
Michael B Zwick
Grace M Aldrovandi
Children's Hospital of Los Angeles · USBoston University · USScripps Research Institute · USUniversity of Alabama at Birmingham · USUniversity of Washington · USColumbia University · USNational HIV/AIDS/STI/TB Council · ZMUniversity Teaching Hospital · ZM

Funding

International Maternal Pediatric Adolescent AIDS Clinical Trials (IMPAACT) GroupU01AI068632 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI JACKSON, J BROOKS · 2006 to 2010
$109.7M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Grace C. John-Stewart · 1988 to 2026
$104.9M
Short Exclusive Breastfeeding to Reduce Postnatal Transmission of HIVR01HD039611 · NICHD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI THEA, DONALD M · 2000 to 2006
$8.0M
Pathogenesis of Mother to Child Transmission of HIVR01HD040777 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ALDROVANDI, GRACE M · 2002 to 2011
$4.4M
Targeting neutralizing antibody-defined sites on HIV gp41 for vaccine designR01AI069993 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI ZWICK, MICHAEL B · 2007 to 2011
$2.3M
Austrian Science Fund FWF J 2845NIAID NIH HHS AI69993NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI069993NIAID NIH HHS U01 AI068632NICHD NIH HHS HD 39611NICHD NIH HHS HD 40777NICHD NIH HHS HD 57161NICHD NIH HHS R01 HD039611NICHD NIH HHS R01 HD040777PHS HHS T 32 067587
6 · The paper itself

Abstract

Human antibody 4E10 targets the highly conserved membrane-proximal external region (MPER) of the HIV-1 transmembrane glycoprotein, gp41, and has extraordinarily broad neutralizing activity. It is considered by many to be a prototype for vaccine development. In this study, we describe four subjects infected with viruses carrying rare MPER polymorphisms associated with resistance to 4E10 neutralization. In one case resistant virus carrying a W680G substitution was transmitted from mother to infant. We used site-directed mutagenesis to demonstrate that the W680G substitution is necessary for conferring the 4E10-resistant phenotype, but that it is not sufficient to transfer the phenotype to a 4E10-sensitive Env. Our third subject carried Envs with a W680R substitution causing variable resistance to 4E10, indicating that residues outside the MPER are required to confer the phenotype. A fourth subject possessed a F673L substitution previously associated with 4E10 resistance. For all three subjects with W680 polymorphisms, we observed additional residues in the MPER that co-varied with position 680 and preserved charged distributions across this region. Our data provide important caveats for vaccine development targeting the MPER. Naturally occurring Env variants described in our study also represent unique tools for probing the structure-function of HIV-1 envelope.

Indexed as

Polymorphism, GeneticFemaleGene Products, envGenotypeHIV-1HIV-2HIV Envelope Protein gp41HumansInfantInfant, NewbornInhibitory Concentration 50Likelihood FunctionsMothersMutagenesis, Site-DirectedNeutralization TestsPhenotypeGene Products, envHIV Envelope Protein gp41Recombinant Fusion Proteins

Identifiers

PMID20352106
PMCPMC2843716
OpenAlexW2001989473

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.