ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2009
LigerCat: using "MeSH Clouds" from journal, article, or gene citations to facilitate the identification of relevant biomedical literature.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
14 citing papers in PubMed.
- O-JMeSH: creating a bilingual English-Japanese controlled vocabulary of MeSH UIDs through machine translation and mutual information.Genomics & informatics · 2021Article
- Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature.Database : the journal of biological databases and curation · 2021Article
- MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank.Journal of biomedical semantics · 2017Article
- Rapid and Reusable Text Visualization and Exploration Development with DELVE.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2017Article
- Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.Bioinformatics (Oxford, England) · 2016Article
- Improving the utility of MeSH® terms using the TopicalMeSH representation.Journal of biomedical informatics · 2016Article
- PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2014Article
- A practical application of text mining to literature on cognitive rehabilitation and enhancement through neurostimulation.Frontiers in systems neuroscience · 2014Review
- Studying PubMed usages in the field for complex problem solving: Implications for tool design.Journal of the American Society for Information Science and Technology : JASIST · 2013Article
- Article
- Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).BMC bioinformatics · 2012Article
- Inferring novel gene-disease associations using Medical Subject Heading Over-representation Profiles.Genome medicine · 2012Article
- Genes2WordCloud: a quick way to identify biological themes from gene lists and free text.Source code for biology and medicine · 2011Article
- A vector space model approach to identify genetically related diseases.Journal of the American Medical Informatics Association : JAMIAArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
The identification of relevant literature from within large collections is often a challenging endeavor. In the context of indexed resources, such as MEDLINE, it has been shown that keywords from a controlled vocabulary (e.g., MeSH) can be used in combination to retrieve relevant search results. One effective strategy for identifying potential search terms is to examine a collection of documents for frequently occurring terms. In this way, "Tag clouds" are a popular mechanism for ascertaining terms associated with a collection of documents. Here, we present the Literature and Genomic Electronic Resource Catalogue (LigerCat) system for exploring biomedical literature through the selection of terms within a "MeSH cloud" that is generated based on an initial query using journal, article, or gene data. The resultant interface is encapsulated within a Web interface: http://ligercat.ubio.org. The system is also available for installation under an MIT license.
Indexed as
Identifiers
20351918PMC2815376What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.