Evidence map›Paper›PMID 20351145›Full record

ArticleInfection and immunity2010

Global transcriptional response of macrophage-like THP-1 cells to Shiga toxin type 1.

Dinorah Leyva-Illades, Rama P Cherla, Cristi L Galindo, Ashok K Chopra, Vernon L Tesh

Abstract read
In one paragraph

Article in Infection and immunity, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  10. Stress-induced gene expression and behavior are controlled by DNA methylation and methyl donor availability in the dentate gyrus.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Dinorah Leyva-IlladesDepartment of Microbial and Molecular Pathogenesis, 407 Reynolds Medical Building, Texas A&M Health Science Center, College Station, TX 77843-1114, USA.
Rama P Cherla
Cristi L Galindo
Ashok K Chopra
Vernon L Tesh
Texas A&M Health Science Center · USThe University of Texas Medical Branch at Galveston · USVirginia Tech · US

Funding

Identification of New Antigens for a Plague VaccineR01AI064389 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CHOPRA, ASHOK K · 2005 to 2015
$3.8M
Pathogenic Mechanisms of Shiga ToxinsR01AI034530 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI TESH, VERNON L. · 2001 to 2010
$2.2M
Cytotoxic Enterotoxin in Aeromonas-mediated DiseasesR01AI041611 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CHOPRA, ASHOK K · 1997 to 2006
$1.1M
NIAID NIH HHS 2R01AI34530-10NIAID NIH HHS R01 AI034530NIAID NIH HHS R01 AI041611NIAID NIH HHS R01 AI064389NIAID NIH HHS R01 AI41611
6 · The paper itself

Abstract

Shiga toxins (Stxs) are bacterial cytotoxins produced by the enteric pathogens Shigella dysenteriae serotype 1 and some serotypes of Escherichia coli that cause bacillary dysentery and hemorrhagic colitis, respectively. To date, approaches to studying the capacity of Stxs to alter gene expression in intoxicated cells have been limited to individual genes. However, it is known that many of the signaling pathways activated by Stxs regulate the expression of multiple genes in mammalian cells. To expand the scope of analysis of gene expression and to better understand the underlying mechanisms for the various effects of Stxs on host cell functions, we carried out comparative microarray analyses to characterize the global transcriptional response of human macrophage-like THP-1 cells to Shiga toxin type 1 (Stx1) and lipopolysaccharides. The data were analyzed by using a rigorous combinatorial approach with three separate statistical algorithms. A total of 36 genes met the criteria of upregulated expression in response to Stx1 treatment, with 14 genes uniquely upregulated by Stx1. Microarray data were validated by real-time reverse transcriptase PCR for genes encoding early growth response 1 (Egr-1) (transcriptional regulator), cyclooxygenase 2 (COX-2; inflammation), and dual specificity phosphatase 1 (DUSP1), DUSP5, and DUSP10 (regulation of mitogen-activated protein kinase signaling). Stx1-mediated signaling through extracellular signal-regulated kinase 1/2 and Egr-1 appears to be involved in the increased expression and production of the proinflammatory mediator tumor necrosis factor alpha. Activation of COX-2 is associated with the increased production of proinflammatory and vasoactive eicosanoids. However, the capacity of Stx1 to increase the expression of genes encoding phosphatases suggests that mechanisms to dampen the macrophage proinflammatory response may be built into host response to the toxins.

Indexed as

Gene Expression ProfilingStress, PhysiologicalCell LineEscherichia coli ProteinsHumansLipopolysaccharidesMacrophagesOligonucleotide Array Sequence AnalysisShiga Toxin 1Up-RegulationEscherichia coli ProteinsLipopolysaccharidesShiga Toxin 1

Identifiers

PMID20351145
PMCPMC2876531
OpenAlexW2109905546

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.