Evidence map›Paper›PMID 20348429›Full record

ArticleThe Plant cell2010

Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula.

Marina A Naoumkina, Luzia V Modolo, David V Huhman, Ewa Urbanczyk-Wochniak, Yuhong Tang, Lloyd W Sumner, Richard A Dixon

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 183 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Saponin Biosynthesis in Pulses.Plants (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Cleaning thePlants (Basel, Switzerland) · 2021
    Article
  11. Article
  12. Article
  13. CRISPR/Cas9-Mediated Targeted Mutagenesis ofFrontiers in plant science · 2021
    Article
  14. Article
  15. Multiomics-based characterization of specialized metabolites biosynthesis in Cornus Officinalis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Marina A NaoumkinaPlant Biology Division, Samuel Roberts Noble Foundation, Ardmore, Oklahoma 73401, USA.
Luzia V Modolo
David V Huhman
Ewa Urbanczyk-Wochniak
Yuhong Tang
Lloyd W Sumner
Richard A Dixon
Noble Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saponins, an important group of bioactive plant natural products, are glycosides of triterpenoid or steroidal aglycones (sapogenins). Saponins possess many biological activities, including conferring potential health benefits for humans. However, most of the steps specific for the biosynthesis of triterpene saponins remain uncharacterized at the molecular level. Here, we use comprehensive gene expression clustering analysis to identify candidate genes involved in the elaboration, hydroxylation, and glycosylation of the triterpene skeleton in the model legume Medicago truncatula. Four candidate uridine diphosphate glycosyltransferases were expressed in Escherichia coli, one of which (UGT73F3) showed specificity for multiple sapogenins and was confirmed to glucosylate hederagenin at the C28 position. Genetic loss-of-function studies in M. truncatula confirmed the in vivo function of UGT73F3 in saponin biosynthesis. This report provides a basis for future studies to define genetically the roles of multiple cytochromes P450 and glycosyltransferases in triterpene saponin biosynthesis in Medicago.

Indexed as

Cloning, MolecularCluster AnalysisCytochrome P-450 Enzyme SystemDNA, PlantEscherichia coliGene Expression Regulation, PlantGlycosylationGlycosyltransferasesHydroxylationMedicago truncatulaOleanolic AcidOligonucleotide Array Sequence AnalysisPlant ProteinsRetroelementsSaponinsSubstrate SpecificityCytochrome P-450 Enzyme SystemDNA, PlantGlycosyltransferaseshederageninOleanolic AcidPlant ProteinsRetroelementsSaponinsTriterpenes

Identifiers

PMID20348429
PMCPMC2861471
OpenAlexW2115579638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.