Evidence map›Paper›PMID 20348387›Full record

ArticleEukaryotic cell2010

Characterization of the Roco protein family in Dictyostelium discoideum.

Wouter N van Egmond, Peter J M van Haastert

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Cells · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Roco Proteins: GTPases with a Baroque Structure and Mechanism.International journal of molecular sciences · 2019
    Review
  8. The dual enzyme LRRK2 hydrolyzes GTP in both its GTPase and kinase domains in vitro.Biochimica et biophysica acta. Proteins and proteomics · 2017
    Article
  9. Structural model of the dimeric Parkinson's protein LRRK2 reveals a compact architecture involving distant interdomain contacts.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Review
  11. Ten years and counting: moving leucine-rich repeat kinase 2 inhibitors to the clinic.Movement disorders : official journal of the Movement Disorder Society · 2015
    Review
  12. Review
  13. Article
  14. Review
  15. Roco kinase structures give insights into the mechanism of Parkinson disease-related leucine-rich-repeat kinase 2 mutations.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  16. Article
  17. Article
  18. Signaling mechanisms for chemotaxis.Development, growth & differentiation · 2011
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Wouter N van EgmondDepartment of Cell Biochemistry, University of Groningen, Kerklaan 30, 9751 NN Haren, Netherlands.
Peter J M van Haastert
University of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Roco family consists of multidomain Ras-GTPases that include LRRK2, a protein mutated in familial Parkinson's disease. The genome of the cellular slime mold Dictyostelium discoideum encodes 11 Roco proteins. To study the functions of these proteins, we systematically knocked out the roco genes. Previously described functions for GbpC, Pats1, and QkgA (Roco1 to Roco3) were confirmed, while novel developmental defects were identified in roco4- and roco11-null cells. Cells lacking Roco11 form larger fruiting bodies than wild-type cells, while roco4-null cells show strong developmental defects during the transition from mound to fruiting body; prestalk cells produce reduced levels of cellulose, leading to unstable stalks that are unable to properly lift the spore head. Detailed phylogenetic analysis of four slime mold species reveals that QkgA and Roco11 evolved relatively late by duplication of an ancestor roco4 gene (later than approximately 300 million years ago), contrary to the situation with other roco genes, which were already present before the split of the common ancestor of D. discoideum and Polysphondylium pallidum (before approximately 600 million years ago). Together, our data show that the Dictyostelium Roco proteins serve a surprisingly diverse set of functions and highlight Roco4 as a key protein for proper stalk cell formation.

Indexed as

Multigene FamilyDictyosteliumGene Expression Regulation, DevelopmentalGreen Fluorescent ProteinsMutationOrgan SpecificityPhenotypePhylogenyPromoter Regions, GeneticProtein TransportProtozoan ProteinsGreen Fluorescent ProteinsProtozoan Proteins

Identifiers

PMID20348387
PMCPMC2863948
OpenAlexW2165308894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.