Evidence map›Paper›PMID 20348296›Full record

ArticleApplied and environmental microbiology2010

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.

Francesca Turroni, Elena Foroni, Mary O'Connell Motherway, Francesca Bottacini, Vanessa Giubellini, Aldert Zomer, Alberto Ferrarini, Massimo Delledonne, Ziding Zhang, Douwe van Sinderen and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Francesca TurroniDepartment of Genetics, Biology of Microorganisms, Anthropology and Evolution, University of Parma, Parma, Italy.
Elena Foroni
Mary O'Connell Motherway
Francesca Bottacini
Vanessa Giubellini
Aldert Zomer
Alberto Ferrarini
Massimo Delledonne
Ziding Zhang
Douwe van Sinderen
Marco Ventura
University of Parma · ITNational University of Ireland · IEUniversity of Verona · ITChina Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the serpin (serine protease inhibitor) superfamily have been identified in higher multicellular eukaryotes, as well as in bacteria, although examination of available genome sequences has indicated that homologs of the bacterial serpin-encoding gene (ser) are not widely distributed. In members of the genus Bifidobacterium this gene appears to be present in at least 5, and perhaps up to 9, of the 30 species tested. Moreover, phylogenetic analysis using available bacterial and eukaryotic serpin sequences revealed that bifidobacteria produce serpins that form a separate clade. We characterized the ser(210B) locus of Bifidobacterium breve 210B, which encompasses a number of genes whose deduced protein products display significant similarity to proteins encoded by corresponding loci found in several other bifidobacteria. Northern hybridization, primer extension, microarray, reverse transcription-PCR (RT-PCR), and quantitative real-time PCR (qRT-PCR) analyses revealed that a 3.5-kb polycistronic mRNA encompassing the ser(210B) operon with a single transcriptional start site is strongly induced following treatment of B. breve 210B cultures with some proteases. Interestingly, transcription of other bifidobacterial ser homologs appears to be triggered by different proteases.

Indexed as

Models, MolecularAmino Acid SequenceBase SequenceBifidobacteriumGene Expression Regulation, BacterialGenome, BacterialMolecular Sequence DataPhylogenyProtein Structure, TertiarySequence AlignmentSerine ProteasesSerpinsSerine ProteasesSerpins

Identifiers

PMID20348296
PMCPMC2869134
OpenAlexW2161462766

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.