Evidence map›Paper›PMID 20348249›Full record

ArticleJournal of bacteriology2010

Structure and protein-protein interaction studies on Chlamydia trachomatis protein CT670 (YscO Homolog).

Emily Lorenzini, Alexander Singer, Bhag Singh, Robert Lam, Tatiana Skarina, Nickolay Y Chirgadze, Alexei Savchenko, Radhey S Gupta

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 35 citations in OpenAlex.

  1. Type III Secretion inMicrobiology and molecular biology reviews : MMBR · 2023
    Review
  2. Article
  3. Review
  4. Crystal structure of an inorganic pyrophosphatase from Chlamydia trachomatis D/UW-3/Cx.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  5. Article
  6. The multiple functions of the numerousMicrobial cell (Graz, Austria) · 2019
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Emily LorenziniDepartment of Biochemistry and Biomedical Science, McMaster University, Hamilton, Canada.
Alexander Singer
Bhag Singh
Robert Lam
Tatiana Skarina
Nickolay Y Chirgadze
Alexei Savchenko
Radhey S Gupta
McMaster University · CAUniversity of Toronto · CAStructural Genomics Consortium · CA

Funding

CIHRNIAID NIH HHS HHSN272200700058C
6 · The paper itself

Abstract

Comparative genomic studies have identified many proteins that are found only in various Chlamydiae species and exhibit no significant sequence similarity to any protein in organisms that do not belong to this group. The CT670 protein of Chlamydia trachomatis is one of the proteins whose genes are in one of the type III secretion gene clusters but whose cellular functions are not known. CT670 shares several characteristics with the YscO protein of Yersinia pestis, including the neighboring genes, size, charge, and secondary structure, but the structures and/or functions of these proteins remain to be determined. Although a BLAST search with CT670 did not identify YscO as a related protein, our analysis indicated that these two proteins exhibit significant sequence similarity. In this paper, we report that the CT670 crystal, solved at a resolution of 2 A, consists of a single coiled coil containing just two long helices. Gel filtration and analytical ultracentrifugation studies showed that in solution CT670 exists in both monomeric and dimeric forms and that the monomer predominates at lower protein concentrations. We examined the interaction of CT670 with many type III secretion system-related proteins (viz., CT091, CT665, CT666, CT667, CT668, CT669, CT671, CT672, and CT673) by performing bacterial two-hybrid assays. In these experiments, CT670 was found to interact only with the CT671 protein (YscP homolog), whose gene is immediately downstream of ct670. A specific interaction between CT670 and CT671 was also observed when affinity chromatography pull-down experiments were performed. These results suggest that CT670 and CT671 are putative homologs of the YcoO and YscP proteins, respectively, and that they likely form a chaperone-effector pair.

Indexed as

Amino Acid SequenceBacterial ProteinsCentrifugationChlamydia trachomatisChromatography, AffinityChromatography, GelCrystallizationMembrane ProteinsMolecular Sequence DataProtein BindingProtein Structure, SecondaryProtein Structure, TertiarySequence Homology, Amino AcidTwo-Hybrid System TechniquesBacterial ProteinsMembrane ProteinsYscO protein, Yersinia pestis

Identifiers

PMID20348249
PMCPMC2876502
OpenAlexW2103457521

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.