Evidence map›Paper›PMID 20348248›Full record

ArticleThe American journal of pathology2010

Genetic and epigenetic mechanisms down-regulate FGF receptor 2 to induce melanoma-associated antigen A in breast cancer.

Xuegong Zhu, Sylvia L Asa, Shereen Ezzat

RetractedOpen access · bronzeAbstract readRetracted Publication
In one paragraph

Article in The American journal of pathology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Retraction · 2015-08-01Falsification/Fabrication of Data · Falsification/Fabrication of Image · Investigation by Company/Institution · Investigation by Journal/Publisher ·
  • Retracted
5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Xuegong ZhuDepartment of Medicine, University Health Network, University of Toronto, Toronto, Ontario, Canada.
Sylvia L Asa
Shereen Ezzat
University Health Network · CAUniversity of Toronto · CA

Funding

Canadian Institutes of Health Research MOP-86493
6 · The paper itself

Abstract

Recent genome-wide association studies have identified single nucleotide polymorphisms (SNPs) in the gene encoding fibroblast growth factor receptor 2 (FGFR2) as a risk factor for breast cancer. We examined the relationship between these intron 2 SNPs and gene expression in breast carcinomas. Primary breast tissue showed a common occurrence of these SNPs accompanied by FGFR2 expression in normal ductal epithelium. Unexpectedly, we found that FGFR2 mRNA and protein levels were reduced in microdissected cancer cells when compared with paired normal breast epithelium. FGFR2 down-regulation was associated with DNA methylation and loss-of-heterozygosity. Where FGFR2-IIIb was expressed in tumor cells, it was accompanied by up-regulation of the RNA-binding proteins ESRP1/2, consistent with splicing of this isoform. Reduction in FGFR2 was associated with re-expression of its putative target melanoma-associated antigen (MAGE-A) in primary carcinoma cells. Conversely, forced expression or activation of FGFR2-IIIb resulted in MAGE-A silencing. These data provide the first evidence for FGFR2 down-regulation in breast carcinomas harboring intron 2 SNPs. Our findings underscore the significance of epigenetic and somatic changes that can potentially modify the effects of germline polymorphisms in determining FGFR2 gene expression.

Indexed as

Gene Expression Regulation, NeoplasticBreast NeoplasmsCarcinomaCell Line, TumorDNA MethylationFemaleGene Expression ProfilingGene SilencingGenetic Predisposition to DiseaseHumansIntronsNeoplasm ProteinsPeptide FragmentsReceptor, Fibroblast Growth Factor, Type 2Risk FactorsRNA, MessengerMAGE-A1 protein (278-286), humanNeoplasm ProteinsPeptide FragmentsReceptor, Fibroblast Growth Factor, Type 2RNA, Messenger

Identifiers

PMID20348248
PMCPMC2861098
OpenAlexW2058795465

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.