Evidence map›Paper›PMID 20348107›Full record

ArticleThe Journal of biological chemistry2010

Interaction between DNA Polymerase lambda and anticancer nucleoside analogs.

Miguel Garcia-Diaz, Michael S Murray, Thomas A Kunkel, Kai-Ming Chou

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Ribonucleotide discrimination by translesion synthesis DNA polymerases.Critical reviews in biochemistry and molecular biology · 2018
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. DNA lesion bypass polymerases and 4'-thio-β-Darabinofuranosylcytosine (T-araC).International journal of biochemistry and molecular biology · 2011
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Miguel Garcia-DiazLaboratory of Structural Biology and Laboratory of Molecular Genetics, Department of Health and Human Services, NIEHS, National Institutes of Health, Research Triangle Park, North Carolina 27709, USA.
Michael S Murray
Thomas A Kunkel
Kai-Ming Chou
Indiana University – Purdue University Indianapolis · USNational Institute of Environmental Health Sciences · USNational Institutes of Health · US

Funding

Structure-Function Studies Of DNA Replication FidelityZIAES065070 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 2009 to 2025
$30.6M
Structure-Function Studies Of DNA Replication FidelityZ01ES065070 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1991 to 2008
$4.3M
DNA Lesion Bypass Polymerases and Therapeutic CompoundsR01CA112446 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI CHOU, KAI-MING · 2007 to 2012
$1.1M
Intramural NIH HHS Z01 ES065070NCI NIH HHS R01 CA112446
6 · The paper itself

Abstract

The anticancer activity of cytarabine (AraC) and gemcitabine (dFdC) is thought to result from chain termination after incorporation into DNA. To investigate their incorporation into DNA at atomic level resolution, we present crystal structures of human DNA polymerase lambda (Pol lambda) bound to gapped DNA and containing either AraC or dFdC paired opposite template dG. These structures reveal that AraC and dFdC can bind within the nascent base pair binding pocket of Pol lambda. Although the conformation of the ribose of AraCTP is similar to that of normal dCTP, the conformation of dFdCTP is significantly different. Consistent with these structures, Pol lambda efficiently incorporates AraCTP but not dFdCTP. The data are consistent with the possibility that Pol lambda could modulate the cytotoxic effect of AraC.

Indexed as

AnimalsAntineoplastic AgentsCytarabineDeoxycytidineDNADNA-Directed DNA PolymeraseDNA Polymerase betaDNA RepairDNA ReplicationDose-Response Relationship, DrugGemcitabineHumansKineticsMiceModels, MolecularNucleosidesAntineoplastic AgentsCytarabineDeoxycytidineDNADNA-Directed DNA PolymeraseDNA Polymerase betaDNA polymerase beta2GemcitabineNucleosidesNucleotides

Identifiers

PMID20348107
PMCPMC2878035
OpenAlexW2103072634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.