Evidence map›Paper›PMID 20347992›Full record

ArticleJournal of structural biology2010

Prediction of protein crystallization outcome using a hybrid method.

Frank H Zucker, Christine Stewart, Jaclyn dela Rosa, Jessica Kim, Li Zhang, Liren Xiao, Jenni Ross, Alberto J Napuli, Natascha Mueller, Lisa J Castaneda and 10 more

Abstract read
In one paragraph

Article in Journal of structural biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Selection of Biophysical Methods for Characterisation of Membrane Proteins.International journal of molecular sciences · 2019
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Frank H ZuckerMedical Structural Genomics of Pathogenic Protozoa, School of Medicine, University of Washington, Seattle, WA 98195-7742, United States.
Christine Stewart
Jaclyn dela Rosa
Jessica Kim
Li Zhang
Liren Xiao
Jenni Ross
Alberto J Napuli
Natascha Mueller
Lisa J Castaneda
Stephen R Nakazawa Hewitt
Tracy L Arakaki
Eric T Larson
Easwara Subramanian
Christophe L M J Verlinde
Erkang Fan
Frederick S Buckner
Wesley C Van Voorhis
Ethan A Merritt
Wim G J Hol

Funding

Structural Genomics of Pathogenic ProtozoaP50GM064655 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2001 to 2004
$25.3M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Prediction of Protein Crystallization and Diffraction QualityR21GM088518 · NIGMS · UNIVERSITY OF WASHINGTON · PI MERRITT, ETHAN A · 2009 to 2010
$427k
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIGMS NIH HHS GM088518NIGMS NIH HHS GM64655NIGMS NIH HHS P50 GM064655NIGMS NIH HHS R21 GM088518
6 · The paper itself

Abstract

The great power of protein crystallography to reveal biological structure is often limited by the tremendous effort required to produce suitable crystals. A hybrid crystal growth predictive model is presented that combines both experimental and sequence-derived data from target proteins, including novel variables derived from physico-chemical characterization such as R(30), the ratio between a protein's DSF intensity at 30°C and at T(m). This hybrid model is shown to be more powerful than sequence-based prediction alone - and more likely to be useful for prioritizing and directing the efforts of structural genomics and individual structural biology laboratories.

Indexed as

Models, MolecularCrystallizationCrystallography, X-RayData Interpretation, StatisticalProteinsSequence Analysis, ProteinProteins

Identifiers

PMID20347992
PMCPMC2957526

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.