Evidence map›Paper›PMID 20346720›Full record

ArticleMolecular cell2010

A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation.

Daniela Kleine-Kohlbrecher, Jesper Christensen, Julien Vandamme, Iratxe Abarrategui, Mads Bak, Niels Tommerup, Xiaobing Shi, Or Gozani, Juri Rappsilber, Anna Elisabetta Salcini and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed, 1 pooled it
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 1 synthesis or guideline pooled it, 212 citations in OpenAlex.

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76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Daniela Kleine-KohlbrecherBiotech Research and Innovation Centre (BRIC), Centre for Epigenetics, University of Copenhagen, Copenhagen, Denmark.
Jesper Christensen
Julien Vandamme
Iratxe Abarrategui
Mads Bak
Niels Tommerup
Xiaobing Shi
Or Gozani
Juri Rappsilber
Anna Elisabetta Salcini
Kristian Helin
University of Copenhagen · DKStanford University · USThe University of Texas MD Anderson Cancer Center · USUniversity of Edinburgh · GB

Funding

Function of PHD Domain Proteins in Chromatin RegulationR01GM079641 · NIGMS · STANFORD UNIVERSITY · PI GOZANI, OR P. · 2007 to 2020
$4.5M
NIGMS NIH HHS R01 GM079641Wellcome Trust 084229
6 · The paper itself

Abstract

X-linked mental retardation (XLMR) is an inherited disorder that mostly affects males and is caused by mutations in genes located on the X chromosome. Here, we show that the XLMR protein PHF8 and a C. elegans homolog F29B9.2 catalyze demethylation of di- and monomethylated lysine 9 of histone H3 (H3K9me2/me1). The PHD domain of PHF8 binds to H3K4me3 and colocalizes with H3K4me3 at transcription initiation sites. Furthermore, PHF8 interacts with another XMLR protein, ZNF711, which binds to a subset of PHF8 target genes, including the XLMR gene JARID1C. Of interest, the C. elegans PHF8 homolog is highly expressed in neurons, and mutant animals show impaired locomotion. Taken together, our results functionally link the XLMR gene PHF8 to two other XLMR genes, ZNF711 and JARID1C, indicating that MR genes may be functionally linked in pathways, causing the complex phenotypes observed in patients developing MR.

Indexed as

Amino Acid SequenceDNA-Binding ProteinsHistone DemethylasesHumansMaleMethylationMolecular Sequence DataMutationProtein BindingProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidTranscription FactorsX-Linked Intellectual DisabilityDNA-Binding ProteinsHistone DemethylasesPHF8 protein, humanRecombinant ProteinsTranscription FactorsZNF711 protein, human

Identifiers

PMID20346720
PMCPMC2989439
OpenAlexW2144666643

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.