Evidence map›Paper›PMID 20346169›Full record

ArticleBMC microbiology2010

Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti.

Maria A Trainer, David Capstick, Alicja Zachertowska, Kathy N Lam, Scott R D Clark, Trevor C Charles

Abstract read
In one paragraph

Article in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Biosynthesis of polyhydroxybutyrate byFrontiers in plant science · 2024
    Article
  3. Article
  4. The Class II Trehalose 6-phosphate Synthase GeneFrontiers in plant science · 2016
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Maria A TrainerDepartment of Biology, University of Waterloo, 200 University Ave W, Waterloo, ON N2L 3G1, Canada.
David Capstick
Alicja Zachertowska
Kathy N Lam
Scott R D Clark
Trevor C Charles

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundS. meliloti forms indeterminate nodules on the roots of its host plant alfalfa (Medicago sativa). Bacteroids of indeterminate nodules are terminally differentiated and, unlike their non-terminally differentiated counterparts in determinate nodules, do not accumulate large quantities of Poly-3-hydroxybutyrate (PHB) during symbiosis. PhaZ is in intracellular PHB depolymerase; it represents the first enzyme in the degradative arm of the PHB cycle in S. meliloti and is the only enzyme in this half of the PHB cycle that remains uncharacterized.

resultsThe S. meliloti phaZ gene was identified by in silico analysis, the ORF was cloned, and a S. meliloti phaZ mutant was constructed. This mutant exhibited increased PHB accumulation during free-living growth, even when grown under non-PHB-inducing conditions. The phaZ mutant demonstrated no reduction in symbiotic capacity; interestingly, analysis of the bacteroids showed that this mutant also accumulated PHB during symbiosis. This mutant also exhibited a decreased capacity to tolerate long-term carbon starvation, comparable to that of other PHB cycle mutants. In contrast to other PHB cycle mutants, the S. meliloti phaZ mutant did not exhibit any decrease in rhizosphere competitiveness; however, this mutant did exhibit a significant increase in succinoglycan biosynthesis.

conclusionsS. meliloti bacteroids retain the capacity to synthesize PHB during symbiosis; interestingly, accumulation does not occur at the expense of symbiotic performance. phaZ mutants are not compromised in their capacity to compete for nodulation in the rhizosphere, perhaps due to increased succinoglycan production resulting from upregulation of the succinoglycan biosynthetic pathway. The reduced survival capacity of free-living cells unable to access their accumulated stores of PHB suggests that PHB is a crucial metabolite under adverse conditions.

Indexed as

Bacterial ProteinsCarbonCarboxylic Ester HydrolasesCloning, MolecularComputational BiologyGene DeletionHydroxybutyratesPlant Root NodulationPlant RootsPolyestersPolyhydroxybutyratesPolysaccharides, BacterialSinorhizobium melilotiSymbiosisBacterial ProteinsCarbonCarboxylic Ester HydrolasesHydroxybutyratespoly-beta-hydroxybutyratepoly-beta-hydroxybutyrate depolymerasePolyestersPolyhydroxybutyratesPolysaccharides, Bacterialsuccinoglycan

Identifiers

PMID20346169
PMCPMC2867953

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.