Evidence map›Paper›PMID 20339440›Full record

ArticleLeukemia2010

Effects of the NUP98-DDX10 oncogene on primary human CD34+ cells: role of a conserved helicase motif.

E R Yassin, A M Abdul-Nabi, A Takeda, N R Yaseen

Open access · greenAbstract read
In one paragraph

Article in Leukemia, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
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  17. Seeking commonalities in fusion proteins of NUP98.Nature structural & molecular biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

E R YassinDepartment of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA.
A M Abdul-Nabi
A Takeda
N R Yaseen
Washington University in St. Louis · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
TRAINING IN THE IMMUNOBIOLOGY AND MOLECULAR CELL BIOLOGY OF CANCERT32CA009547 · NCI · WASHINGTON UNIVERSITY · PI ROBERT DAVID SCHREIBER · 1986 to 2026
$12.1M
Nup98 Gene Rearrangements in Acute Myelogenous LeukemiaR01HL082549 · NHLBI · WASHINGTON UNIVERSITY · PI YASEEN, NABEEL R · 2005 to 2008
$1.3M
Nup98 Gene Rearrangements in Acute Myeloid Leukemia and Myelodysplastic SyndromesK02HL084179 · NHLBI · WASHINGTON UNIVERSITY · PI YASEEN, NABEEL R · 2007 to 2011
$502k
NCI NIH HHS P30 CA091842NCI NIH HHS P30 CA91842NCI NIH HHS T32 CA009547NHLBI NIH HHS K02 HL084179NHLBI NIH HHS R01 HL082549
6 · The paper itself

Abstract

NUP98 gene rearrangements occur in acute myeloid leukemia and result in the expression of fusion proteins. One of the most frequent is NUP98-DDX10 that fuses a portion of NUP98 to a portion of DDX10, a putative DEAD-box RNA helicase. Here, we show that NUP98-DDX10 dramatically increases proliferation and self-renewal of primary human CD34+ cells, and disrupts their erythroid and myeloid differentiation. It localizes to their nuclei and extensively deregulates gene expression. Comparison to another leukemogenic NUP98 fusion, NUP98-HOXA9, reveals a number of genes deregulated by both oncoproteins, including HOX genes, COX-2, MYCN, ANGPT1, REN, HEY1, SOX4 and others. These genes may account for the similar leukemogenic properties of NUP98 fusion oncogenes. The YIHRAGRTAR sequence in the DDX10 portion of NUP98-DDX10 represents a major motif shared by DEAD-box RNA helicases that is required for ATP binding, RNA-binding and helicase functions. Mutating this motif diminished the in vitro transforming ability of NUP98-DDX10, indicating that it has a role in leukemogenesis. These data show for the first time the in vitro transforming ability of NUP98-DDX10 and show that it is partially dependent on one of the consensus helicase motifs of DDX10. They also point to common pathways that may underlie leukemogenesis by different NUP98 fusions.

Indexed as

Cell Transformation, NeoplasticAmino Acid MotifsAntigens, CD34Biomarkers, TumorBlotting, WesternCell DifferentiationCell ProliferationCells, CulturedDEAD-box RNA HelicasesFlow CytometryFluorescent Antibody TechniqueGene Expression ProfilingHematopoietic Stem CellsHumansLuciferasesNuclear Pore Complex ProteinsAntigens, CD34Biomarkers, TumorDDX10 protein, humanDEAD-box RNA HelicasesLuciferasesNuclear Pore Complex ProteinsNup98 protein, humanOncogene Proteins, FusionRNA, Messenger

Identifiers

PMID20339440
PMCPMC2868946
OpenAlexW2003171555

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.