Evidence map›Paper›PMID 20336380›Full record

ArticleMolecular biology reports2011

A novel SNP of the ATP1A1 gene is associated with heat tolerance traits in dairy cows.

Yanxin Liu, Daqi Li, Huixia Li, Xuan Zhou, Genlin Wang

Abstract read
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Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 87 citations in OpenAlex.

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  11. Association Analysis of Polymorphisms in the 5' Flanking Region of theAnimals : an open access journal from MDPI · 2020
    Article
  12. Article
  13. Article
  14. Genetic Selection for Thermotolerance in Ruminants.Animals : an open access journal from MDPI · 2019
    Review
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  16. A Missense Mutation of theAnimals : an open access journal from MDPI · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yanxin LiuInstitute of Cattle Science, Nanjing Agricultural University, Nanjing, 210095, China.
Daqi Li
Huixia Li
Xuan Zhou
Genlin Wang
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PCR low ionic strength single-strand conformation polymorphism (PCR-LIS-SSCP) and DNA sequencing methods were used to analyze the polymorphisms within the coding region of bovine ATP1A1 gene. A novel C/A mutation was identified at the nucleotide position 2789 of the ATP1A1 mRNA, but it was silent with respect to the amino acid sequence of the protein. The LIS-SSCP banding pattern could be divided into three kinds of genotypes, named CC, CA, and AA. Also, the association of the novel SNP of ATP1A1 gene with heat tolerance traits was studied, we found that the individuals with genotype CC showed significantly higher heat resistance than those of genotype CA (P<0.05). Further, the mRNA levels of ATP1A1 gene in lymphocytes of peripheral blood in dairy cows among various temperature groups and genotypes were analyzed by using real-time RT-PCR. Results showed that the expression of ATP1A1 mRNA was highest in heat-stressed cows with CC genotype among the three genotypes (P<0.01), and the ATP1A1 mRNA level at temperature 32.5°C was higher than that at optimal temperature 12.5°C in dairy cows (P<0.01). Simultaneity, the plasma potassium (K+, mmol/l) and sodium (Na+, mmol/l) declined when the temperature dropped (P<0.05). Our findings implied that the novel SNP here could be a potential genetic marker for anti-heat stress trait in dairy cow breeding.

Indexed as

DairyingGenetic Association StudiesHot TemperatureAdaptation, PhysiologicalAnimalsBase SequenceCattleGene Expression Regulation, EnzymologicLymphocytesMolecular Sequence DataPolymerase Chain ReactionPolymorphism, Single NucleotidePolymorphism, Single-Stranded ConformationalPotassiumQuantitative Trait, HeritableRNA, MessengerPotassiumRNA, MessengerSodiumSodium-Potassium-Exchanging ATPase

Identifiers

PMID20336380
OpenAlexW1973253210

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.