Evidence map›Paper›PMID 20309762›Full record

ArticleJournal of biopharmaceutical statistics2010

Haplotype-based pharmacogenetic analysis for longitudinal quantitative traits in the presence of dropout.

Jung-Ying Tzeng, Wenbin Lu, Mark W Farmen, Youfang Liu, Patrick F Sullivan

Abstract read
In one paragraph

Article in Journal of biopharmaceutical statistics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jung-Ying TzengDepartment of Statistics, North Carolina State University, Raleigh, North Carolina, USA. jytzeng@stat.ncsu.edu
Wenbin Lu
Mark W Farmen
Youfang Liu
Patrick F Sullivan

Funding

PUBLIC EDUCATION CAMPAIGN ON DEPRESSION DARTN01MH090001 · NIMH · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · 1989 to 2003
$10.4M
2/2 A genome-wide association study to detect genetic variation for schizophreniaR01MH080403 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2008 to 2010
$4.5M
Genome-wide Haplotype Association Analysis in Mental DisordersR01MH084022 · NIMH · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI TZENG, JUNG-YING · 2009 to 2011
$1.1M
Flexible Statistical Methods for Complex Survival Data in Biomedical StudiesR01CA140632 · NCI · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI LU, WENBIN · 2010 to 2013
$795k
Replication of Schizophrenia Associations in CATIER01MH074027 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2006 to 2007
$715k
NCI NIH HHS R01 CA140632NIMH NIH HHS N01 MH090001NIMH NIH HHS R01 MH074027NIMH NIH HHS R01 MH080403NIMH NIH HHS R01 MH084022
6 · The paper itself

Abstract

We propose a variety of methods based on the generalized estimation equations to address the issues encountered in haplotype-based pharmacogenetic analysis, including analysis of longitudinal data with outcome-dependent dropouts, and evaluation of the high-dimensional haplotype and haplotype-drug interaction effects in an overall manner. We use the inverse probability weights to handle the outcome-dependent dropouts under the missing-at-random assumption, and incorporate the weighted L(1) penalty to select important main and interaction effects with high dimensionality. The proposed methods are easy to implement, computationally efficient, and provide an optimal balance between false positives and false negatives in detecting genetic effects.

Indexed as

Models, StatisticalQuantitative Trait, HeritableAntipsychotic AgentsComputer SimulationData Interpretation, StatisticalGenetic Predisposition to DiseaseHaplotypesHumansLikelihood FunctionsLongitudinal StudiesPatient DropoutsPharmacogeneticsPhenotypeRandomized Controlled Trials as TopicReproducibility of ResultsSchizophreniaAntipsychotic Agents

Identifiers

PMID20309762
PMCPMC2845928

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.