ArticleCurrent genetics2010
Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.
Article in Current genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed, 62 citations in OpenAlex.
- Genetic Diversity and Geographical Distribution of the Red Tide SpeciesMicroorganisms · 2022Article
- Article
- Mitochondrial Genome Evolution in Pelagophyte Algae.Genome biology and evolution · 2021Article
- Definition of a High-Resolution Molecular Marker for Tracking the Genetic Diversity of the Harmful Algal SpeciesFrontiers in microbiology · 2021Article
- Article
- Recurrent Loss, Horizontal Transfer, and the Obscure Origins of Mitochondrial Introns in Diatoms (Bacillariophyta).Genome biology and evolution · 2018Article
- The comparative mitogenomics and phylogenetics of the two grouse-grasshoppers (Insecta, Orthoptera, Tetrigoidea).Biological research · 2017Article
- Complete mitochondrial genome sequence of the freshwater diatomMitochondrial DNA. Part B, Resources · 2017Article
- Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons.Genome biology and evolution · 2016Article
- Unique configuration of genes of silicon transporter in the freshwater pennate diatom Synedra acus subsp. radians.Doklady. Biochemistry and biophysics · 2016Article
- Mitochondrial genome of Turbinaria ornata (Sargassaceae, Phaeophyceae): comparative mitogenomics of brown algae.Current genetics · 2015Article
- Low-Molecular-Weight Metabolites from Diatoms: Structures, Biological Roles and Biosynthesis.Marine drugs · 2015Review
- Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal.Doklady. Biochemistry and biophysics · 2015Article
- Effect of mixotrophic growth on the ultrastructure and fatty acid composition of the diatom Synedra acus from Lake Baikal.Journal of biological research (Thessalonike, Greece) · 2014Article
- A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes.BMC genomics · 2014Article
- An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyteMobile genetic elements · 2014Article
- Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae.BMC genomics · 2013Article
- Complete mitochondrial genomes of two cockroaches, Blattella germanica and Periplaneta americana, and the phylogenetic position of termites.Current genetics · 2012Article
- Article
- Aquaporin-like protein of the diatom Synedra acus.Doklady. Biochemistry and biophysicsArticle
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Authors and funding
10 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The first two mitochondrial genomes of marine diatoms were previously reported for the centric Thalassiosira pseudonana and the raphid pennate Phaeodactylum tricornutum. As part of a genomic project, we sequenced the complete mitochondrial genome of the freshwater araphid pennate diatom Synedra acus. This 46,657 bp mtDNA encodes 2 rRNAs, 24 tRNAs, and 33 proteins. The mtDNA of S. acus contains three group II introns, two inserted into the cox1 gene and containing ORFs, and one inserted into the rnl gene and lacking an ORF. The compact gene organization contrasts with the presence of a 4.9-kb-long intergenic region, which contains repeat sequences. Comparison of the three sequenced mtDNAs showed that these three genomes carry similar gene pools, but the positions of some genes are rearranged. Phylogenetic analysis performed with a fragment of the cox1 gene of diatoms and other heterokonts produced a tree that is similar to that derived from 18S RNA genes. The introns of mtDNA in the diatoms seem to be polyphyletic. This study demonstrates that pyrosequencing is an efficient method for complete sequencing of mitochondrial genomes from diatoms, and may soon give valuable information about the molecular phylogeny of this outstanding group of unicellular organisms.
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