Evidence map›Paper›PMID 20308323›Full record

ArticleMolecular and cellular biology2010

Human AlkB homolog ABH8 Is a tRNA methyltransferase required for wobble uridine modification and DNA damage survival.

Dragony Fu, Jennifer A N Brophy, Clement T Y Chan, Kyle A Atmore, Ulrike Begley, Richard S Paules, Peter C Dedon, Thomas J Begley, Leona D Samson

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 218 citations in OpenAlex.

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  11. tRNA modification enzyme-dependent redox homeostasis regulates synapse formation and memory.Proceedings of the National Academy of Sciences of the United States of America · 2024
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72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Dragony FuDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02138, USA.
Jennifer A N Brophy
Clement T Y Chan
Kyle A Atmore
Ulrike Begley
Richard S Paules
Peter C Dedon
Thomas J Begley
Leona D Samson
Center for Environmental Health · USUniversity at Albany, State University of New York · USDivision of Chemistry · USNational Institute of Environmental Health Sciences · US

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
Molecular Analysis Of Cell Cycle Control During CarcinogenesisZIAES021157 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PAULES, RICHARD · 2009 to 2013
$5.1M
EUKARYTIC DNA ALKYLATION REPAIRR01CA055042 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAMSON, LEONA D. · 1991 to 2010
$4.8M
API 5000 LC/MS/MS System PackageS10RR023783 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI DEDON, PETER C · 2007 to 2007
$424k
Intramural NIH HHSNCI NIH HHS CA055042NCI NIH HHS R01 CA055042NCRR NIH HHS S10 RR023783NCRR NIH HHS S10-RR023783NIEHS NIH HHS ES002109NIEHS NIH HHS ES01701NIEHS NIH HHS P30 ES002109
6 · The paper itself

Abstract

tRNA nucleosides are extensively modified to ensure their proper function in translation. However, many of the enzymes responsible for tRNA modifications in mammals await identification. Here, we show that human AlkB homolog 8 (ABH8) catalyzes tRNA methylation to generate 5-methylcarboxymethyl uridine (mcm(5)U) at the wobble position of certain tRNAs, a critical anticodon loop modification linked to DNA damage survival. We find that ABH8 interacts specifically with tRNAs containing mcm(5)U and that purified ABH8 complexes methylate RNA in vitro. Significantly, ABH8 depletion in human cells reduces endogenous levels of mcm(5)U in RNA and increases cellular sensitivity to DNA-damaging agents. Moreover, DNA-damaging agents induce ABH8 expression in an ATM-dependent manner. These results expand the role of mammalian AlkB proteins beyond that of direct DNA repair and support a regulatory mechanism in the DNA damage response pathway involving modulation of tRNA modification.

Indexed as

DNA DamageAlkB Homolog 8, tRNA MethyltransferaseAnimalsCell LineHumansMolecular Sequence DataMolecular StructureNucleic Acid ConformationPhylogenyRNA, TransfertRNA MethyltransferasesUridineALKBH8 protein, humanAlkB Homolog 8, tRNA MethyltransferaseRNA, TransfertRNA MethyltransferasesUridine

Identifiers

PMID20308323
PMCPMC2863699
OpenAlexW2150038630

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.