Evidence map›Paper›PMID 20306123›Full record

ArticleJournal of bioenergetics and biomembranes2010

The obligate alkaliphile Bacillus clarkii K24-1U retains extruded protons at the beginning of respiration.

Kazuaki Yoshimune, Hajime Morimoto, Yu Hirano, Junshi Sakamoto, Hidetoshi Matsuyama, Isao Yumoto

Abstract read
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In one paragraph

Article in Journal of bioenergetics and biomembranes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. HFrontiers in microbiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Kazuaki YoshimuneResearch Institute of Genome-based Biofactory, Tsukisamu-Higashi, Toyohira-ku, Sapporo, Hokkaido, 062-8517, Japan. k.yoshimune@aist.go.jp
Hajime Morimoto
Yu Hirano
Junshi Sakamoto
Hidetoshi Matsuyama
Isao Yumoto
National Institute of Advanced Industrial Science and Technology · JPTokai University · JPKyushu Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alkaliphiles grow under alkaline conditions that might be disadvantageous for the transmembrane pH gradient (Delta pH, outside acidic). In this study, the behaviors of extruded protons by the respiration of obligate alkaliphilic Bacillus clarkii K24-1U were investigated by comparison with those of neutralophilic Bacillus subtilis IAM 1026. Although whole-cell suspensions of both Bacillus species consumed oxygen immediately after the addition of air, there were lag times before the suspensions were acidified. Under alkaline conditions, the lag time for B. clarkii significantly increased, whereas that for B. subtilis decreased. In the presence of valinomycin or ETH-157, which disrupts the membrane electrical potential (Delta psi), the cell suspensions of both Bacillus species acidified immediately after the addition of air. Artificial electroneutral antiporters (nigericin and monensin) that eliminate the Delta pH exhibited no significant effect on the lag times of the two Bacillus species except that monensin increased the lag times of B. clarkii. The inhibition of ATPase and the Na(+) channel also exhibited little effects on the lag times. The increased lag time for B. clarkii may represent the Delta psi-dependent proton retention on the outer surface of the cytoplasmic membrane to generate a sufficient Delta pH under alkaline conditions.

Indexed as

ProtonsAcetamidesAdaptation, BiologicalATP Synthetase ComplexesBacillusCell MembraneDicyclohexylcarbodiimideHydrogen-Ion ConcentrationJapanOxygen ConsumptionSpecies SpecificityValinomycinAcetamidesATP Synthetase ComplexesDicyclohexylcarbodiimideETH 157ProtonsValinomycin

Identifiers

PMID20306123
OpenAlexW2009771524

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.