Evidence map›Paper›PMID 20305127›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2010

Regulation of homocysteine metabolism and methylation in human and mouse tissues.

Natalie C Chen, Fan Yang, Louis M Capecci, Ziyu Gu, Andrew I Schafer, William Durante, Xiao-Feng Yang, Hong Wang

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Disulfidptosis in tumor progression.Cell death discovery · 2025
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  8. Molecular Landscape of Tourette's Disorder.International journal of molecular sciences · 2023
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  9. Article
  10. The role of m5C methyltransferases in cardiovascular diseases.Frontiers in cardiovascular medicine · 2023
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. The Impact of HAntioxidants (Basel, Switzerland) · 2021
    Review
  17. Indian journal of clinical biochemistry : IJCB · 2021
    Article
  18. Article
  19. Article
  20. Functional and Pathological Roles of AHCY.Frontiers in cell and developmental biology · 2021
    Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Natalie C ChenDepartment of Pharmacology, Temple University School of Medicine, 3420 North Broad St., MRB, Philadelphia, PA 19140, USA.
Fan Yang
Louis M Capecci
Ziyu Gu
Andrew I Schafer
William Durante
Xiao-Feng Yang
Hong Wang

Funding

Atherogenic mechanisms with homocysteineR01HL077288 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI WANG, HONG · 2004 to 2014
$3.8M
Inhibition of Endothelial Growth by HomocysteineR01HL067033 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI WANG, HONG · 2002 to 2011
$3.0M
Suppression of vascular endothelial cell inflammationR01HL094451 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI YANG, XIAOFENG · 2009 to 2013
$1.8M
Role of HHcy in diabetic vascular diseaseR01HL082774 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI WANG, HONG · 2006 to 2010
$1.8M
ARGINASE AND ARTERIAL INJURYR01HL074966 · NHLBI · UNIVERSITY OF MISSOURI-COLUMBIA · PI DURANTE, WILLIAM · 2005 to 2009
$1.6M
NHLBI NIH HHS HL094451NHLBI NIH HHS HL67033NHLBI NIH HHS HL74966NHLBI NIH HHS HL77288NHLBI NIH HHS HL82774NHLBI NIH HHS R01 HL067033NHLBI NIH HHS R01 HL074966NHLBI NIH HHS R01 HL077288NHLBI NIH HHS R01 HL082774NHLBI NIH HHS R01 HL094451
6 · The paper itself

Abstract

Hyperhomocysteinemia is an independent risk factor for cardiovascular disease. Homocysteine (Hcy) metabolism involves multiple enzymes; however, tissue Hcy metabolism and its relevance to methylation remain unknown. Here, we established gene expression profiles of 8 Hcy metabolic and 12 methylation enzymes in 20 human and 19 mouse tissues through bioinformatic analysis using expression sequence tag clone counts in tissue cDNA libraries. We analyzed correlations between gene expression, Hcy, S-adenosylhomocysteine (SAH), and S-adenosylmethionine (SAM) levels, and SAM/SAH ratios in mouse tissues. Hcy metabolic and methylation enzymes were classified into two types. The expression of Type 1 enzymes positively correlated with tissue Hcy and SAH levels. These include cystathionine beta-synthase, cystathionine-gamma-lyase, paraxonase 1, 5,10-methylenetetrahydrofolate reductase, betaine:homocysteine methyltransferase, methionine adenosyltransferase, phosphatidylethanolamine N-methyltransferases and glycine N-methyltransferase. Type 2 enzyme expressions correlate with neither tissue Hcy nor SAH levels. These include SAH hydrolase, methionyl-tRNA synthase, 5-methyltetrahydrofolate:Hcy methyltransferase, S-adenosylmethionine decarboxylase, DNA methyltransferase 1/3a, isoprenylcysteine carboxyl methyltransferases, and histone-lysine N-methyltransferase. SAH is the only Hcy metabolite significantly correlated with Hcy levels and methylation enzyme expression. We established equations expressing combined effects of methylation enzymes on tissue SAH, SAM, and SAM/SAH ratios. Our study is the first to provide panoramic tissue gene expression profiles and mathematical models of tissue methylation regulation.

Indexed as

Gene Expression RegulationAnimalsComputational BiologyEnzymesGene Expression ProfilingHomocysteineHumansInfant, NewbornMetabolic Networks and PathwaysMethylationMiceS-AdenosylhomocysteineS-AdenosylmethionineEnzymesHomocysteineS-AdenosylhomocysteineS-Adenosylmethionine

Identifiers

PMID20305127
PMCPMC2909276

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.