Evidence map›Paper›PMID 20305123›Full record

ArticleThe Plant cell2010

Promoters of the barley germin-like GER4 gene cluster enable strong transgene expression in response to pathogen attack.

Axel Himmelbach, Luo Liu, Uwe Zierold, Lothar Altschmied, Helmut Maucher, Franziska Beier, Doreen Müller, Götz Hensel, Andreas Heise, Andres Schützendübel and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Bioinformatics and Expression Analyses of theInternational journal of molecular sciences · 2024
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  5. Genome-wide analysis of radishFrontiers in plant science · 2024
    Article
  6. Genome-Wide Identification and Analysis of theInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Prospects of pan-genomics in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Review
  15. Article
  16. Article
  17. GhABP19, a Novel Germin-Like Protein FromFrontiers in plant science · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Axel HimmelbachLeibniz-Institute of Plant Genetics and Crop Plant Research, 06466-Gatersleben, Germany.
Luo Liu
Uwe Zierold
Lothar Altschmied
Helmut Maucher
Franziska Beier
Doreen Müller
Götz Hensel
Andreas Heise
Andres Schützendübel
Jochen Kumlehn
Patrick Schweizer
Leibniz Institute of Plant Genetics and Crop Plant Research · DEUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunity of plants triggered by pathogen-associated molecular patterns (PAMPs) is based on the execution of an evolutionarily conserved defense response that includes the accumulation of pathogenesis-related (PR) proteins as well as multiple other defenses. The most abundant PR transcript of barley (Hordeum vulgare) leaf epidermis attacked by the powdery mildew fungus Blumeria graminis f. sp hordei encodes the germin-like protein GER4, which has superoxide dismutase activity and functions in PAMP-triggered immunity. Here, we show that barley GER4 is encoded by a dense cluster of tandemly duplicated genes (GER4a-h) that underwent several cycles of duplication. The genomic organization of the GER4 locus also provides evidence for repeated gene birth and death cycles. The GER4 promoters contain multiple WRKY factor binding sites (W-boxes) preferentially located in promoter fragments that were exchanged between subfamily members by gene conversion. Mutational analysis of TATA-box proximal W-boxes used GER4c promoter-beta-glucuronidase fusions to reveal their enhancing effects and functional redundancy on pathogen-induced promoter activity. The data suggest enhanced transcript dosage as an evolutionary driving force for the local expansion and functional redundancy of the GER4 locus. In addition, the GER4c promoter provides a tool to study signal transduction of PAMP-triggered immunity and to engineer strictly localized and pathogen-regulated disease resistance in transgenic cereal crops.

Indexed as

Multigene FamilyPromoter Regions, GeneticAscomycotaDNA, PlantGene Expression ProfilingGene Expression Regulation, PlantGenes, DuplicateGenes, PlantGlycoproteinsHordeumPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedSequence Analysis, DNATransgenesDNA, PlantgerminGlycoproteinsPlant Proteins

Identifiers

PMID20305123
PMCPMC2861458
OpenAlexW2169038961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.