Evidence map›Paper›PMID 20304805›Full record

Trial reportBlood2010

The JAK2 46/1 haplotype predisposes to MPL-mutated myeloproliferative neoplasms.

Amy V Jones, Peter J Campbell, Philip A Beer, Susanne Schnittger, Alessandro M Vannucchi, Katerina Zoi, Melanie J Percy, Mary Frances McMullin, Linda M Scott, William Tapper and 9 more

Open access · bronzeAbstract readClinical TrialMulticenter StudyRandomized Controlled Trial
In one paragraph

Trial report in Blood, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 100 citations in OpenAlex.

  1. Philadelphia-negative classical myeloproliferative neoplasms: critical concepts and management recommendations from European LeukemiaNet.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2011
    Guideline
  2. Trial
  3. Homozygosity of germ lineBlood neoplasia · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Clonal hematopoiesis of indeterminate potential and cardiovascular disease.Translational research : the journal of laboratory and clinical medicine · 2023
    Review
  10. The Contribution ofInternational journal of molecular sciences · 2022
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Germline variations atOncotarget · 2017
    Article
  17. Review
  18. Article
  19. Article
  20. Prognosis of Primary Myelofibrosis in the Genomic Era.Clinical lymphoma, myeloma & leukemia · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 14 institutions in 5 countries.

Amy V JonesWessex Regional Genetics Laboratory, Salisbury District Hospital, Salisbury, United Kingdom.
Peter J Campbell
Philip A Beer
Susanne Schnittger
Alessandro M Vannucchi
Katerina Zoi
Melanie J Percy
Mary Frances McMullin
Linda M Scott
William Tapper
Richard T Silver
David Oscier
Claire N Harrison
Harald Grallert
Aliaksei Kisialiou
Paul Strike
Andrew J Chase
Anthony R Green
Nicholas C P Cross
University of Cambridge · GBUniversity of Southampton · GBWessex Regional Genetics Laboratory · GBAcademy of Athens · GRCornell University · USHelmholtz Zentrum München · DEMunich Leukemia Laboratory (Germany) · DEQueen's University Belfast · GBRoyal Bournemouth Hospital · GBSalisbury District Hospital · GBSt Thomas' Hospital · GBUniversity of Florence · ITUniversity of Ulster · GBWellcome Sanger Institute · GB

Funding

HISPANIC SECONDARY STROKE PREVENTION INITIATIVER01MD009164 · NIMHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI CARRASQUILLO, OLVEEN · 2014 to 2018
$1.9M
THE INCHIANTI FOLLOW-UP STUDY-260012111N01AG012111 · NIA · ITALIAN NATL. INST. ON AGING · 2003 to 2003
–
Cancer Research UK 8961Intramural NIH HHSMedical Research Council G0300497NIA NIH HHS N01-AG-1-1NIA NIH HHS N01-AG-1-2111NIA NIH HHS N01-AG-5-0002NIMHD NIH HHS 263 MD 821336NIMHD NIH HHS 263 MD 9164NIMHD NIH HHS R01 MD009164Wellcome Trust 07611Wellcome Trust 088340
6 · The paper itself

Abstract

The 46/1 JAK2 haplotype predisposes to V617F-positive myeloproliferative neoplasms, but the underlying mechanism is obscure. We analyzed essential thrombocythemia patients entered into the PT-1 studies and, as expected, found that 46/1 was overrepresented in V617F-positive cases (n = 404) versus controls (n = 1492, P = 3.9 x 10(-11)). The 46/1 haplotype was also overrepresented in cases without V617F (n = 347, P = .009), with an excess seen for both MPL exon 10 mutated and V617F, MPL exon 10 nonmutated cases. Analysis of further MPL-positive, V617F-negative cases confirmed an excess of 46/1 (n = 176, P = .002), but no association between MPL mutations and MPL haplotype was seen. An excess of 46/1 was also seen in JAK2 exon 12 mutated cases (n = 69, P = .002), and these mutations preferentially arose on the 46/1 chromosome (P = .029). No association between 46/1 and clinical or laboratory features was seen in the PT-1 cohort either with or without V617F. The excess of 46/1 in JAK2 exon 12 cases is compatible with both the "hypermutability" and "fertile ground" hypotheses, but the excess in MPL-mutated cases argues against the former. No difference in sequence, splicing, or expression of JAK2 was found on 46/1 compared with other haplotypes, suggesting that any functional difference of JAK2 on 46/1, if it exists, must be relatively subtle.

Indexed as

MutationAdultAgedAmino Acid SubstitutionBase SequenceCase-Control StudiesCohort StudiesDNA PrimersExonsFemaleGene FrequencyGenetic Predisposition to DiseaseHaplotypesHumansJanus Kinase 2Linkage DisequilibriumDNA PrimersJAK2 protein, humanJanus Kinase 2MPL protein, humanReceptors, Thrombopoietin

Identifiers

PMID20304805
PMCPMC3145114
OpenAlexW2009130073

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.