Evidence map›Paper›PMID 20304013›Full record

ArticleJournal of virological methods2010

Oligonucleotide microarray with a minimal number of probes for the detection and identification of thirteen genera of plant viruses.

Yongjiang Zhang, Jun Yin, Guifen Li, Mingfu Li, Xin Huang, Hongjun Chen, Wenjun Zhao, Shuifang Zhu

Abstract readEvaluation Study
In one paragraph

Article in Journal of virological methods, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yongjiang ZhangInstitute of Animal and Plant Quarantine, Chinese Academy of Inspection and Quarantine, No. 241 Huixinli, Huixin West Street, Beijing 100029, China.
Jun Yin
Guifen Li
Mingfu Li
Xin Huang
Hongjun Chen
Wenjun Zhao
Shuifang Zhu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A major challenge facing agriculture at present is the development of techniques that can screen field samples and other plant materials simultaneously for the presence of many viruses. Microarray techniques show promise in this regard, as their high throughput nature can potentially detect a range of viruses using a single test. In this paper we present an array that can detect a wide spectrum of 169 plant virus species from 13 different genera. The array was constructed using an automated probe design protocol which generated a minimal number of probes to detect viruses at the genus level. The designed arrays showed a high specificity and sensitivity when tested with a set of standard virus samples. Field samples collected from a severe disease outbreak of Panax notoginseng farms in Yunnan, China, in 2001 were screened, where a potyvirus infection was identified associated with the disease.

Indexed as

ChinaComputational BiologyGenome, ViralMolecular Sequence DataOligonucleotide Array Sequence AnalysisOligonucleotide ProbesPanax notoginsengPlant VirusesSensitivity and SpecificitySequence Analysis, DNAVirologyOligonucleotide Probes

Identifiers

PMID20304013
PMCPMC7112823

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.