Evidence map›Paper›PMID 20303728›Full record

ArticleThe Journal of nutritional biochemistry2011

Integrated hepatic transcriptome and proteome analysis of mice with high-fat diet-induced nonalcoholic fatty liver disease.

Irina A Kirpich, Leila N Gobejishvili, Marjorie Bon Homme, Sabine Waigel, Matt Cave, Gavin Arteel, Shirish S Barve, Craig J McClain, Ion V Deaciuc

Abstract readValidation Study
In one paragraph

Article in The Journal of nutritional biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed.

  1. Article
  2. Global loss of selenocysteine lyase in mice drives lipid accumulation in brown adipocytes.American journal of physiology. Endocrinology and metabolism · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Biology · 2023
    Article
  9. Article
  10. Selenium and selenoproteins in thermogenic adipocytes.Archives of biochemistry and biophysics · 2022
    Review
  11. Review
  12. Review
  13. Article
  14. A Transcriptomic Response toInternational journal of molecular sciences · 2022
    Article
  15. Linking drug and food addiction via compulsive appetite.British journal of pharmacology · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Irina A KirpichDepartment of Internal Medicine, Division of Gastroenterology, Hepatology and Nutrition, University of Louisville, Louisville, KY 40202, USA.
Leila N Gobejishvili
Marjorie Bon Homme
Sabine Waigel
Matt Cave
Gavin Arteel
Shirish S Barve
Craig J McClain
Ion V Deaciuc

Funding

ZEBRAFISH VISUAL FUNCTION RECOVERY FOLLOWING OPTIC NERVE DAMAGEP20RR016481 · NCRR · UNIVERSITY OF LOUISVILLE · PI COOPER, NIGEL G.F. · 2001 to 2011
$34.8M
PROJ 12: STEM CELL-BASED VACCINE FOR CANCER PROPHYLAXISP20RR018733 · NCRR · UNIVERSITY OF LOUISVILLE · PI LI, QIUTANG · 2003 to 2011
$18.9M
Strategic Vision & Impact on Environmental HealthP30ES014443 · NIEHS · UNIVERSITY OF LOUISVILLE · PI RAMOS, KENNETH S. · 2007 to 2010
$4.4M
Tumor Necrosis Factor and Alcoholic Liver DiseaseR37AA010762 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2001 to 2010
$3.6M
S-adenosylhomocysteine and S-adenosylmethionine in Alcoholic Liver DiseaseR01AA015970 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2005 to 2010
$2.0M
The Role of Alcohol in HIV Therapy HepatotoxicityR01AA018016 · NIAAA · UNIVERSITY OF LOUISVILLE · PI BARVE, SHIRISH S, EATON, JOHN W · 2008 to 2012
$1.7M
Cyclic AMP, Cytokine Modulation and Alcoholic Liver DiseaseR01AA018869 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2009 to 2013
$1.7M
PCBs worsen obesity/metabolic syndrome through 'toxic metabolic endotoxemia'R01ES021375 · NIEHS · UNIVERSITY OF LOUISVILLE · PI CAVE, MATTHEW C · 2012 to 2016
$1.7M
Mechanisms of S-adenosylmethionine in NASHR01DK071765 · NIDDK · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2005 to 2009
$1.5M
Alcohol Liver Disease and Alcohol-Nutrient InteractionsP01AA017103 · NIAAA · UNIVERSITY OF LOUISVILLE · PI MCCLAIN, CRAIG J. · 2008 to 2010
$1.3M
Zinc supplementation in alcoholic cirrhosisK23AA018399 · NIAAA · UNIVERSITY OF LOUISVILLE · PI CAVE, MATTHEW C · 2010 to 2014
$1.0M
Matrix Metalloproteinases in Alcoholic Liver InjuryR21AA015611 · NIAAA · UNIVERSITY OF LOUISVILLE · PI DEACIUC, ION · 2006 to 2007
$342k
NCRR NIH HHS P20 RR016481NCRR NIH HHS P20 RR018733NCRR NIH HHS P20RR018733NCRR NIH HHS P20 RR16481NIAAA NIH HHS K23 AA018399NIAAA NIH HHS P01 AA017103NIAAA NIH HHS P01AA017103NIAAA NIH HHS R01 AA015970NIAAA NIH HHS R01AA015970NIAAA NIH HHS R01 AA018016NIAAA NIH HHS R01AA018016NIAAA NIH HHS R01 AA018869NIAAA NIH HHS R21 AA015611NIAAA NIH HHS R21AA015611NIAAA NIH HHS R37 AA010762NIAAA NIH HHS R37AA010762NIDDK NIH HHS R01 DK071765NIDDK NIH HHS R01DK071765NIEHS NIH HHS P30 ES014443NIEHS NIH HHS R01 ES021375PHS HHS P30 ESO14443
6 · The paper itself

Abstract

Nonalcoholic fatty liver disease (NAFLD) is the most common form of liver disease in the US and refers to a wide spectrum of liver damage, including simple steatosis, steatohepatitis, fibrosis and cirrhosis. The goal of the present study was to achieve a more detailed understanding of the molecular changes in response to high fat-induced liver steatosis through the identification of a differentially expressed liver transcriptome and proteome. Male C57/BL6 mice fed a high-fat lard diet for 8 weeks developed visceral obesity and hepatic steatosis characterized by significantly increased liver and plasma free fatty acid and triglyceride levels and plasma alanine aminotransferase activities. Transcriptome analysis demonstrated that, compared to the control diet (CD), high-fat diet changed the expression of 309 genes (132 up- and 177 down-regulated; by a twofold change and more, P<.05). Multiple genes encoding proteins involved in lipogenesis were down-regulated, whereas genes involved in fatty acid oxidation were up-regulated. Proteomic analysis revealed 12 proteins which were differentially expressed. Of these, glutathione S-transferases mu1 and pi1 and selenium-binding protein 2 were decreased at both the gene and protein levels. This is the first study to perform a parallel transcriptomic and proteomic analysis of diet-induced hepatic steatosis. Several key pathways involving xenobiotic and lipid metabolism, the inflammatory response and cell-cycle control were identified. These pathways provide targets for future mechanistic and therapeutic studies as related to the development and prevention of NAFLD.

Indexed as

Gene Expression RegulationAnimalsDietary FatsFatty AcidsFatty LiverGene Expression ProfilingGlutathione S-Transferase piGlutathione TransferaseLipogenesisLiverMaleMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisProteomeRNA, MessengerDietary FatsFatty AcidsGlutathione S-Transferase piGlutathione TransferaseGstp1 protein, mouselardProteomeRNA, MessengerSelenbp2 protein, mouseSelenium-Binding Proteins

Identifiers

PMID20303728
PMCPMC3860361

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.