Evidence map›Paper›PMID 20302630›Full record

ArticleAnnals of clinical microbiology and antimicrobials2010

Prevalence of Helicobacter pylori vacA, cagA, iceA and oipA genotypes in Tunisian patients.

Khansa Ben Mansour, Chédlia Fendri, Meriem Zribi, Afef Masmoudi, Mounir Labbene, Azza Fillali, Nabil Ben Mami, Taoufik Najjar, Ahmed Meherzi, Tahar Sfar and 1 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 2 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 2 syntheses or guidelines pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  10. Analysis ofGastroenterology research · 2018
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  11. Prevalence ofInternational journal of microbiology · 2018
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  12. Prevalence of SpecificJournal of clinical and diagnostic research : JCDR · 2017
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  13. Low Rate ofJournal of clinical and diagnostic research : JCDR · 2017
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  14. Article
  15. Iranian journal of veterinary research · 2017
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  16. Veterinary research forum : an international quarterly journal · 2017
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  17. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Khansa Ben MansourMicrobiology laboratory/UR04SP08 Rabta University Hospital, Tunis, Tunisia. bmkhansa@gmail.com
Chédlia Fendri
Meriem Zribi
Afef Masmoudi
Mounir Labbene
Azza Fillali
Nabil Ben Mami
Taoufik Najjar
Ahmed Meherzi
Tahar Sfar
Christophe Burucoa
Hôpital La Rabta · TNHôpital Charles-Nicolle · TNHôpital Mongi Slim · TNMilitary Hospital of Tunis · TNUniversité de Poitiers · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDistinct virulence factors of H. pylori have been described: the vaculating cytotoxin (vacA), the cytotoxin associated gene (cagA), the induced by contact with epithelium factor Antigen (iceA gene) and the outer membrane protein oipA. In Tunisia, there are no data regarding the pattern of H. pylori genotypes; therefore, this prospective and multicentre study was the first to be done in Tunisia and aimed to investigate the prevalence of the vacA, cagA, iceA and oipA genotypes of H. pylori isolates from Tunisian patients with peptic ulceration, gastric cancer, MALT lymphoma and gastritis.

methodsH. pylori was cultured from endoscopic biopsies obtained from 281 Tunisian patients. The vacA alleles, cagA, iceA and oipA genotypes were determined by PCR.

resultsThe vacA s1m1, s1m2 and s2m2 were respectively found in 10.7%, 12.5% and 45.6% of strains. The s2m1 genotype was not detected in our study. The cagA was found in 61.6% of isolates. The iceA1 and the iceA2 genotypes were respectively isolated in 60.2% and in 16% of strains. The oipA genotype was detected in 90.8% of strains. Considering the vacA and iceA genotypes, the presence of multiple H. pylori strains in a single biopsy specimen was found respectively in 31.4% and 23.8%. The comparison between strains isolated from antrum and fundus showed that Tunisian patients were infected with two or more strains of different cagA, vacA, iceA and oipA genotypes and the discordance was respectively in 9.6%, 4.6%, 8.9% and 8.5% of strains.

conclusionOur results showed that in 46% (131 strains among 281), the H. pylori strains were highly virulent in relation of the three or four virulent factors they could carry. These finding were described before in the literature. Tunisian patients were colonized by one or multiple strains of H. pylori in the same time in relation of presence of vacA m1/m2 and iceA1/iceA2 in the same biopsy. The discordance between strains isolated from antrum and fundus was high, and it is in favour of multicolonization.

Indexed as

AdolescentAdultAgedAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsChildChild, PreschoolFemaleGastric FundusGene FrequencyGenes, BacterialHelicobacter InfectionsHelicobacter pyloriHumansMaleAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinscagA protein, Helicobacter pyloriice nucleation proteinOipA protein, Helicobacter pyloriVacA protein, Helicobacter pylori

Identifiers

PMID20302630
PMCPMC2855517
OpenAlexW2124718604

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.