Evidence map›Paper›PMID 20301166›Full record

ArticleChembiochem : a European journal of chemical biology2010

Photocaged t7 RNA polymerase for the light activation of transcription and gene function in pro- and eukaryotic cells.

Chungjung Chou, Douglas D Young, Alexander Deiters

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. Article
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  4. Optogenetic Tools for Regulating RNA Metabolism and Functions.Chembiochem : a European journal of chemical biology · 2024
    Review
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  19. Review
  20. Optochemical Control of Biological Processes in Cells and Animals.Angewandte Chemie (International ed. in English) · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chungjung ChouDepartment of Chemistry, North Carolina State University, Raleigh, NC 27695, USA.
Douglas D Young
Alexander Deiters
North Carolina State University · US

Funding

Switchable Systems for Spatio-Temporal Control of Gene Expression in ZebrafishR01GM079114 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI DEITERS, ALEXANDER · 2007 to 2011
$1.6M
NIGMS NIH HHS R01 GM079114NIGMS NIH HHS R01GM079114
6 · The paper itself

Abstract

A light-activatable bacteriophage T7 RNA polymerase (T7RNAP) has been generated through the site-specific introduction of a photocaged tyrosine residue at the crucial position Tyr639 within the active site of the enzyme. The photocaged tyrosine disrupts polymerase activity by blocking the incoming nucleotide from reaching the active site of the enzyme. However, a brief irradiation with nonphototoxic UV light of 365 nm removes the ortho-nitrobenzyl caging group from Tyr639 and restores the RNA polymerase activity of T7RNAP. The complete orthogonality of T7RNAP to all endogenous RNA polymerases in pro- and eukaryotic systems allowed for the photochemical activation of gene expression in bacterial and mammalian cells. Specifically, E. coli cells were engineered to produce photocaged T7RNAP in the presence of a GFP reporter gene under the control of a T7 promoter. UV irradiation of these cells led to the spatiotemporal activation of GFP expression. In an analogous fashion, caged T7RNAP was transfected into human embryonic kidney (HEK293T) cells. Irradiation with UV light led to the activation of T7RNAP, thereby inducing RNA polymerization and expression of a luciferase reporter gene in tissue culture. The ability to achieve spatiotemporal regulation of orthogonal RNA synthesis enables the precise dissection and manipulation of a wide range of cellular events, including gene function.

Indexed as

Transcriptional ActivationUltraviolet RaysCatalytic DomainCell LineDNA-Directed RNA PolymerasesEscherichia coliHumansLuciferasesModels, MolecularPhotochemical ProcessesTyrosineViral Proteinsbacteriophage T7 RNA polymeraseDNA-Directed RNA PolymerasesLuciferasesTyrosineViral Proteins

Identifiers

PMID20301166
PMCPMC3762680
OpenAlexW2013956252

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.