ArticleInternational journal of data mining and bioinformatics2010
Struct-NB: predicting protein-RNA binding sites using structural features.
Article in International journal of data mining and bioinformatics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- DGSite: A Well-Calibrated Deep Learning Framework for Protein-RNA Binding Site Prediction.ACS omega · 2026Article
- MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.Biomolecules · 2023Article
- PRIP: A Protein-RNA Interface Predictor Based on Semantics of Sequences.Life (Basel, Switzerland) · 2022Article
- Computational approaches for the analysis of RNA-protein interactions: A primer for biologists.The Journal of biological chemistry · 2019Review
- Individually double minimum-distance definition of protein-RNA binding residues and application to structure-based prediction.Journal of computer-aided molecular design · 2018Article
- A Brief Review of RNA-Protein Interaction Database Resources.Non-coding RNA · 2017Review
- Review
- Advances in the characterization of RNA-binding proteins.Wiley interdisciplinary reviews. RNA · 2016Review
- Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors.BMC bioinformatics · 2016Article
- Article
- A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs.PLoS computational biology · 2015Article
- Computational Prediction of RNA-Binding Proteins and Binding Sites.International journal of molecular sciences · 2015Review
- RNA-binding residues prediction using structural features.BMC bioinformatics · 2015Article
- SNBRFinder: A Sequence-Based Hybrid Algorithm for Enhanced Prediction of Nucleic Acid-Binding Residues.PloS one · 2015Article
- Identifying RNA-binding residues based on evolutionary conserved structural and energetic features.Nucleic acids research · 2014Article
- Article
- Prediction of RNA binding proteins comes of age from low resolution to high resolution.Molecular bioSystems · 2013Review
- Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.BMC bioinformatics · 2012Article
- From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces.Nucleic acids research · 2011Article
- PRIDB: a Protein-RNA interface database.Nucleic acids research · 2011Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
We analyse sequence and structural features of protein-RNA interfaces using RB-147, a non-redundant dataset of protein-RNA complexes extracted from the PDB. We train classifiers using machine learning algorithms to predict protein-RNA interfaces from sequence and structure-derived features of proteins. Our experiments show that Struct-NB, a Naive Bayes classifier that exploits structural features, outperforms its counterparts that use only sequence features to predict protein-RNA binding residues.
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Registered trials
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