Evidence map›Paper›PMID 20300121›Full record

ArticleJournal of human genetics2010

Functional impact of a single-nucleotide polymorphism in the OPRD1 promoter region.

Huiping Zhang, Joel Gelernter, Jeffrey R Gruen, Henry R Kranzler, Aryeh I Herman, Arthur A Simen

Open access · bronzeAbstract read
In one paragraph

Article in Journal of human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. An intronic variant in OPRD1 predicts treatment outcome for opioid dependence in African-Americans.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2013
    Trial
  2. Article
  3. Review
  4. Epigenetic Modulation of Opioid Receptors by Drugs of Abuse.International journal of molecular sciences · 2022
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Pharmacogenetics of new analgesics.British journal of pharmacology · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Huiping ZhangDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT, USA. huiping.zhang@yale.edu
Joel Gelernter
Jeffrey R Gruen
Henry R Kranzler
Aryeh I Herman
Arthur A Simen
Yale University · USUniversity of Connecticut · USVA Connecticut Healthcare System · US

Funding

SUBSTANCE ABUSEK12DA000167 · NIDA · YALE UNIVERSITY · PI STEPHANIE S O'MALLEY, Marc N Potenza · 1991 to 2026
$17.7M
Sex-specific analysis of opioid dependence GWAS and beyondR01DA012690 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2017
$14.0M
GENETICS OF COCAINE DEPENDENCER01DA012849 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1999 to 2010
$11.5M
Discovery of the 6p21.3 Reading Disability GeneR01NS043530 · NINDS · YALE UNIVERSITY · PI GRUEN, JEFFREY R · 2003 to 2010
$4.3M
Association and Function of Opioid Receptor Gene Variants to Substance DependenceR00DA022891 · NIDA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2009 to 2011
$792k
Epigenetic factors in vulnerability to aging and stressK08AG030970 · NIA · YALE UNIVERSITY · PI SIMEN, ARTHUR A · 2008 to 2010
$432k
Association and Function of Opioid Receptor Gene Variants to Substance DependenceK99DA022891 · NIDA · YALE UNIVERSITY · PI ZHANG, HUIPING · 2007 to 2008
$176k
NIA NIH HHS AG030970NIA NIH HHS K08 AG030970NIDA NIH HHS K12 DA000167NIDA NIH HHS K99 DA022891NIDA NIH HHS K99/R00DA022891NIDA NIH HHS R00 DA022891NIDA NIH HHS R01 DA012690NIDA NIH HHS R01 DA012849NIDA NIH HHS R01 DA12690NIDA NIH HHS R01 DA12849NINDS NIH HHS R01 NS043530NINDS NIH HHS R01NS043530
6 · The paper itself

Abstract

The delta-opioid receptor mediates rewarding effects of many substances of abuse. We reported an increased frequency of the minor G-allele of single-nucleotide polymorphism (SNP) rs569356 (the only variant identified so far in the promoter region of the delta-opioid receptor gene (OPRD1)) in subjects with opioid dependence. In this study, we examined the functional significance of this variant. OPRD1 promoter region harboring SNP rs569356 was amplified by PCR and inserted into a firefly luciferase reporter vector. HEK293 cells were co-transfected with these constructs and a renilla luciferase vector to control for transfection efficiency. Expression of firefly luciferase (driven by the OPRD1 promoter) was measured by a dual luciferase reporter assay and normalized by renilla luciferase expression. Moreover, alleles altering expression were further assessed for binding of human brain nuclear proteins by electrophoretic mobility shift assay (EMSA). The minor G-allele was associated with significantly greater expression levels of firefly luciferase than the major A-allele of SNP rs569356 (P=0.003). EMSA also showed specific gel shift bands, suggesting that SNP rs569356 is situated in the binding site of potential transcription factors. These results suggest that the minor G-allele of SNP rs569356 may enhance transcription factor binding and increase OPRD1 expression.

Indexed as

Polymorphism, Single NucleotideAllelesCell LineElectrophoretic Mobility Shift AssayGene Expression RegulationHumansLuciferasesNuclear ProteinsOligonucleotide ProbesPromoter Regions, GeneticProtein BindingReceptors, Opioid, deltaRecombinant Fusion ProteinsTranscription FactorsTransfectionLuciferasesNuclear ProteinsOligonucleotide ProbesOPRD1 protein, humanReceptors, Opioid, deltaRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID20300121
PMCPMC2876206
OpenAlexW2003928600

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.