ArticleBMC genomics2010
Synteny mapping between common bean and soybean reveals extensive blocks of shared loci.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.
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54 citing papers in PubMed, 122 citations in OpenAlex.
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- Genetic Architecture of Flooding Tolerance in the Dry Bean Middle-American Diversity Panel.Frontiers in plant science · 2017Article
- Natural rhizobial diversity helps to reveal genes and QTLs associated with biological nitrogen fixation in common bean.AIMS microbiology · 2017Review
- Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Comparative analysis of genome-wide Mlo gene family in Cajanus cajan and Phaseolus vulgaris.Genetica · 2016Article
- Further evidence for the genetic basis of qualitative traits and their linkage relationships in Dolichos bean (Lablab purpureus L.).Journal of genetics · 2016Article
- Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.BMC genomics · 2016Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundUnderstanding syntentic relationship between two species is critical to assessing the potential for comparative genomic analysis. Common bean (Phaseolus vulgaris L.) and soybean (Glycine max L.), the two most important members of the Phaseoleae legumes, appear to have a diploid and polyploidy recent past, respectively. Determining the syntentic relationship between these two species will allow researchers to leverage not only genomic resources but also genetic data for important agronomic traits to improve both of these species.
resultsGenetically-positioned transcript loci of common bean were mapped relative to the recent soybean 1.01 pseudochromosome assembly. In nearly every case, each common bean locus mapped to two loci in soybean, a result consistent with the duplicate polyploidy history of soybean. Blocks of synteny averaging 32 cM in common bean and 4.9 Mb in soybean were observed for all 11 common bean linkage groups, and these blocks mapped to all 20 soybean pseudochromosomes. The median physical-to-genetic distance ratio in common bean (based on soybean physical distances) was approximately 120 kb/cM. approximately 15,000 common bean sequences (primarily EST contigs and EST singletons) were electronically positioned onto the common bean map using the shared syntentic blocks as references points.
conclusionThe collected evidence from this mapping strongly supports the duplicate history of soybean. It further provides evidence that the soybean genome was fractionated and reassembled at some point following the duplication event. These well mapped syntentic relationships between common bean and soybean will enable researchers to target specific genomic regions to discover genes or loci that affect phenotypic expression in both species.
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