Evidence map›Paper›PMID 20237561›Full record

ArticleNature2010

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.

Li-Jun Ma, H Charlotte van der Does, Katherine A Borkovich, Jeffrey J Coleman, Marie-Josée Daboussi, Antonio Di Pietro, Marie Dufresne, Michael Freitag, Manfred Grabherr, Bernard Henrissat and 53 more

Abstract readComparative Study
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 782 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
782citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

782 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Structural genome variation drives adaptation of the xylose-fermenting yeast Scheffersomyces stipitis to lignocellulosic hydrolysates.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  6. Article
  7. Article
  8. Identification and characterization ofHorticulture research · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. B chromosomes put the 'super' in supernumerary.Trends in genetics : TIG · 2026
    Review
  13. Article
  14. Towards a Phylogenomic Framework for theInternational journal of molecular sciences · 2026
    Article
  15. Genome assembly of a clinicalMicrobiology resource announcements · 2026
    Article
  16. Article
  17. Involvement ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  18. Article
  19. Article
  20. Article

722 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

63 authors.

Li-Jun MaThe Broad Institute, Cambridge, Massachusetts 02141, USA.
H Charlotte van der Does
Katherine A Borkovich
Jeffrey J Coleman
Marie-Josée Daboussi
Antonio Di Pietro
Marie Dufresne
Michael Freitag
Manfred Grabherr
Bernard Henrissat
Petra M Houterman
Seogchan Kang
Won-Bo Shim
Charles Woloshuk
Xiaohui Xie
Jin-Rong Xu
John Antoniw
Scott E Baker
Burton H Bluhm
Andrew Breakspear
Daren W Brown
Robert A E Butchko
Sinead Chapman
Richard Coulson
Pedro M Coutinho
Etienne G J Danchin
Andrew Diener
Liane R Gale
Donald M Gardiner
Stephen Goff
Kim E Hammond-Kosack
Karen Hilburn
Aurélie Hua-Van
Wilfried Jonkers
Kemal Kazan
Chinnappa D Kodira
Michael Koehrsen
Lokesh Kumar
Yong-Hwan Lee
Liande Li
John M Manners
Diego Miranda-Saavedra
Mala Mukherjee
Gyungsoon Park
Jongsun Park
Sook-Young Park
Robert H Proctor
Aviv Regev
M Carmen Ruiz-Roldan
Divya Sain
Sharadha Sakthikumar
Sean Sykes
David C Schwartz
B Gillian Turgeon
Ilan Wapinski
Olen Yoder
Sarah Young
Qiandong Zeng
Shiguo Zhou
James Galagan
Christina A Cuomo
H Corby Kistler
Martijn Rep

Funding

NEW PHYSICAL METHODOLOGIES FOR GENOMIC ANALYSISR01HG000225 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI SCHWARTZ, DAVID C. · 1991 to 2014
$5.2M
The temporal reconfiguration of regulatory networks: From yeast to cancerDP1OD003958 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI REGEV, AVIV · 2008 to 2011
$3.3M
Diverse Roles for RIC8 During G Protein Signaling in FungiR01GM086565 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI BORKOVICH, KATHERINE A · 2009 to 2012
$1.2M
Biotechnology and Biological Sciences Research Council BBS/E/C/00004973NHGRI NIH HHS R01 HG000225NIGMS NIH HHS R01 GM086565NIH HHS DP1 OD003958
6 · The paper itself

Abstract

Fusarium species are among the most important phytopathogenic and toxigenic fungi. To understand the molecular underpinnings of pathogenicity in the genus Fusarium, we compared the genomes of three phenotypically diverse species: Fusarium graminearum, Fusarium verticillioides and Fusarium oxysporum f. sp. lycopersici. Our analysis revealed lineage-specific (LS) genomic regions in F. oxysporum that include four entire chromosomes and account for more than one-quarter of the genome. LS regions are rich in transposons and genes with distinct evolutionary profiles but related to pathogenicity, indicative of horizontal acquisition. Experimentally, we demonstrate the transfer of two LS chromosomes between strains of F. oxysporum, converting a non-pathogenic strain into a pathogen. Transfer of LS chromosomes between otherwise genetically isolated strains explains the polyphyletic origin of host specificity and the emergence of new pathogenic lineages in F. oxysporum. These findings put the evolution of fungal pathogenicity into a new perspective.

Indexed as

GenomicsChromosomes, FungalEvolution, MolecularFusariumGenome, FungalHost-Parasite InteractionsMultigene FamilyPhenotypePhylogenyProteomeSequence Analysis, DNASyntenyVirulenceProteome

Identifiers

PMID20237561
PMCPMC3048781

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.