Evidence map›Paper›PMID 20236518›Full record

ArticleBMC genomics2010

Complementary transcriptomic, lipidomic, and targeted functional genetic analyses in cultured Drosophila cells highlight the role of glycerophospholipid metabolism in Flock House virus RNA replication.

Kathryn M Castorena, Kenneth A Stapleford, David J Miller

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 50 citations in OpenAlex.

  1. HCV NS3/4A protease relocalizes CCTα to viral replication sites, enhancing phosphatidylcholine synthesis and viral replication.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  17. Positive-strand RNA viruses stimulate host phosphatidylcholine synthesis at viral replication sites.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  20. RNA virus replication depends on enrichment of phosphatidylethanolamine at replication sites in subcellular membranes.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kathryn M CastorenaDepartments of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Kenneth A Stapleford
David J Miller
University of Michigan–Ann Arbor · USYale University · US

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Virus-host interactions in replication complex assemblyR01AI062749 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MILLER, DAVID J · 2005 to 2009
$1.4M
HOST-PATHOGEN INTERACTION IN VIRAL REPLICATIONK08AI001770 · NIAID · UNIVERSITY OF WISCONSIN MADISON · PI MILLER, DAVID J · 2000 to 2002
$389k
NIAID NIH HHS K08-AI01770NIAID NIH HHS R01-AI062749NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32-GM007315
6 · The paper itself

Abstract

backgroundCellular membranes are crucial host components utilized by positive-strand RNA viruses for replication of their genomes. Published studies have suggested that the synthesis and distribution of membrane lipids are particularly important for the assembly and function of positive-strand RNA virus replication complexes. However, the impact of specific lipid metabolism pathways in this process have not been well defined, nor have potential changes in lipid expression associated with positive-strand RNA virus replication been examined in detail.

resultsIn this study we used parallel and complementary global and targeted approaches to examine the impact of lipid metabolism on the replication of the well-studied model alphanodavirus Flock House virus (FHV). We found that FHV RNA replication in cultured Drosophila S2 cells stimulated the transcriptional upregulation of several lipid metabolism genes, and was also associated with increased phosphatidylcholine accumulation with preferential increases in lipid molecules with longer and unsaturated acyl chains. Furthermore, targeted RNA interference-mediated downregulation of candidate glycerophospholipid metabolism genes revealed a functional role of several genes in virus replication. In particular, we found that downregulation of Cct1 or Cct2, which encode essential enzymes for phosphatidylcholine biosynthesis, suppressed FHV RNA replication.

conclusionThese results indicate that glycerophospholipid metabolism, and in particular phosphatidylcholine biosynthesis, plays an important role in FHV RNA replication. Furthermore, they provide a framework in which to further explore the impact of specific steps in lipid metabolism on FHV replication, and potentially identify novel cellular targets for the development of drugs to inhibit positive-strand RNA viruses.

Indexed as

Virus ReplicationAnimalsCells, CulturedCholine-Phosphate CytidylyltransferaseDrosophilaDrosophila ProteinsGene Expression RegulationGene Knockdown TechniquesGenes, InsectGenome, ViralGlycerophospholipidsInsect VirusesLipid MetabolismOligonucleotide Array Sequence AnalysisPhosphatidylcholinesReverse Transcriptase Polymerase Chain ReactionCct1protein, DrosophilaCholine-Phosphate CytidylyltransferaseDrosophila ProteinsGlycerophospholipidsPhosphatidylcholinesRNA, Double-StrandedRNA, Viral

Identifiers

PMID20236518
PMCPMC2847973
OpenAlexW2123074680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.