Evidence map›Paper›PMID 20235609›Full record

ArticleJournal of proteome research2010

Identification of cell surface glycoprotein markers for glioblastoma-derived stem-like cells using a lectin microarray and LC-MS/MS approach.

Jintang He, Yashu Liu, Xiaolei Xie, Thant Zhu, Mary Soules, Francesco DiMeco, Angelo L Vescovi, Xing Fan, David M Lubman

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 73 citations in OpenAlex.

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  14. Whether CD44 is an applicable marker for glioma stem cells.American journal of translational research · 2017
    Article
  15. Article
  16. Living Cell Microarrays: An Overview of Concepts.Microarrays (Basel, Switzerland) · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jintang HeDepartment of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109, USA.
Yashu Liu
Xiaolei Xie
Thant Zhu
Mary Soules
Francesco DiMeco
Angelo L Vescovi
Xing Fan
David M Lubman
Houston Methodist · USMichigan Medicine · US

Funding

Microsequencing in an Ion Trap/reTOF DeviceR01GM049500 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 1994 to 2016
$3.0M
Proteomic Pathways for Pancreatic Cancer Stem CellsR21CA134623 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 2008 to 2009
$367k
NCI NIH HHS R21 CA134623NIGMS NIH HHS R01 GM049500PHS HHS R01 49500
6 · The paper itself

Abstract

Despite progress in the treatment of glioblastoma, more than 95% of patients suffering from this disease still die within 2 years. Recent findings support the belief that cancer stem-like cells are responsible for tumor formation and ongoing growth. Here a method combining lectin microarray and LC-MS/MS was used to discover the cell surface glycoprotein markers of a glioblastoma-derived stem-like cell line. Lectin microarray analysis of cell surface glycans showed that two galactose-specific lectins Trichosanthes kirilowii agglutinin (TKA) and Peanut agglutinin (PNA) could distinguish the stem-like glioblastoma neurosphere culture from a traditional adherent glioblastoma cell line. Agarose-bound TKA and PNA were used to capture the glycoproteins from the two cell cultures, which were analyzed by LC-MS/MS. The glycoproteins were quantified by spectral counting, resulting in the identification of 12 and 11 potential glycoprotein markers from the TKA and PNA captured fractions respectively. Almost all of these proteins were membrane proteins. Differential expression was verified by Western blotting analysis of 6 interesting proteins, including the up-regulated Receptor-type tyrosine-protein phosphatase zeta, Tenascin-C, Chondroitin sulfate proteoglycan NG2, Podocalyxin-like protein 1 and CD90, and the down-regulated CD44. An improved understanding of these proteins may be important for earlier diagnosis and better therapeutic targeting of glioblastoma.

Indexed as

Amino Acid SequenceBiomarkers, TumorBlotting, WesternCell Line, TumorChromatography, LiquidGlioblastomaHumansMembrane GlycoproteinsMolecular Sequence DataNeoplastic Stem CellsPlant LectinsProtein Array AnalysisSubcellular FractionsTandem Mass SpectrometryBiomarkers, TumorMembrane GlycoproteinsPlant Lectins

Identifiers

PMID20235609
PMCPMC2866009
OpenAlexW1973717672

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.