Evidence map›Paper›PMID 20233844›Full record

ArticleMolecular & cellular proteomics : MCP2010

Targeted quantitation of site-specific cysteine oxidation in endogenous proteins using a differential alkylation and multiple reaction monitoring mass spectrometry approach.

Jason M Held, Steven R Danielson, Jessica B Behring, Christian Atsriku, David J Britton, Rachel L Puckett, Birgit Schilling, Judith Campisi, Christopher C Benz, Bradford W Gibson

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Ten "Cheat Codes" for Measuring Oxidative Stress in Humans.Antioxidants (Basel, Switzerland) · 2024
    Review
  6. Review
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  10. Article
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  18. Redox RegulationAntioxidants & redox signaling · 2020
    Review
  19. Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jason M Helddouble daggerBuck Institute for Age Research, Novato, California 94945, USA.
Steven R Danielson
Jessica B Behring
Christian Atsriku
David J Britton
Rachel L Puckett
Birgit Schilling
Judith Campisi
Christopher C Benz
Bradford W Gibson
UCSF Helen Diller Family Comprehensive Cancer Center · USBuck Institute for Research on Aging · US

Funding

PROTEOMICSP01AG025901 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2011
$8.6M
Core--RESEARCH DEVELOPMENTP30AG025708 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI CAMPISI, JUDITH · 2005 to 2009
$3.7M
OxMRM: A Technique to Quantify Oxidation of Endogenous Redox-Sensitive CysteinesR21CA138308 · NCI · BUCK INSTITUTE FOR RESEARCH ON AGING · PI HELD, JASON M. · 2009 to 2011
$845k
4000 Q TRAP TRIPLE QUADRUPOLE/LINEAR ION TRAP LC/MS/MS: NEUROSCIENCE PARKINSON'SS10RR021222 · NCRR · BUCK INSTITUTE FOR AGE RESEARCH · PI GIBSON, BRADFORD WAYNE · 2005 to 2005
$500k
NCI NIH HHS CA138308NCI NIH HHS R21 CA138308NCRR NIH HHS RR0021222NCRR NIH HHS S10 RR021222NIA NIH HHS AG025708NIA NIH HHS AG025901NIA NIH HHS P01 AG025901NIA NIH HHS P30 AG025708
6 · The paper itself

Abstract

Reactive oxygen species (ROS) are both physiological intermediates in cellular signaling and mediators of oxidative stress. The cysteine-specific redox-sensitivity of proteins can shed light on how ROS are regulated and function, but low sensitivity has limited quantification of the redox state of many fundamental cellular regulators in a cellular context. Here we describe a highly sensitive and reproducible oxidation analysis approach (OxMRM) that combines protein purification, differential alkylation with stable isotopes, and multiple reaction monitoring mass spectrometry that can be applied in a targeted manner to virtually any cysteine or protein. Using this approach, we quantified the site-specific cysteine oxidation status of endogenous p53 for the first time and found that Cys182 at the dimerization interface of the DNA binding domain is particularly susceptible to diamide oxidation intracellularly. OxMRM enables analysis of sulfinic and sulfonic acid oxidation levels, which we validate by assessing the oxidation of the catalytic Cys215 of protein tyrosine phosphatase-1B under numerous oxidant conditions. OxMRM also complements unbiased redox proteomics discovery studies as a verification tool through its high sensitivity, accuracy, precision, and throughput.

Indexed as

AlkylationAmino Acid SequenceCell LineCysteineHumansMass SpectrometryMolecular Sequence DataOxidation-ReductionProtein Processing, Post-TranslationalProtein Tyrosine Phosphatase, Non-Receptor Type 1ProteomicsReactive Oxygen SpeciesTumor Suppressor Protein p53CysteineProtein Tyrosine Phosphatase, Non-Receptor Type 1PTPN1 protein, humanReactive Oxygen SpeciesTumor Suppressor Protein p53

Identifiers

PMID20233844
PMCPMC2938085
OpenAlexW2149854830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.