ArticleJournal of biomolecular structure & dynamics2010
The DNA sequence-dependence of nucleosome positioning in vivo and in vitro.
Article in Journal of biomolecular structure & dynamics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- CG-Based Stratification of 8-mers Highlights Functional Roles and Phylogenetic Divergence Markers.International journal of molecular sciences · 2025Article
- Beyond the mono-nucleosome.Biochemical Society transactions · 2025Review
- Profound Non-Randomness in Dinucleotide Arrangements within Ultra-Conserved Non-Coding Elements and the Human Genome.Biology · 2023Article
- Single-Molecule Techniques to Study Chromatin.Frontiers in cell and developmental biology · 2021Review
- periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA.F1000Research · 2021Article
- The human telomeric nucleosome displays distinct structural and dynamic properties.Nucleic acids research · 2020Article
- Atomistic insight into sequence-directed DNA bending and minicircle formation propensity in the absence and presence of phased A-tracts.Journal of computer-aided molecular design · 2020Article
- Article
- High-resolution biophysical analysis of the dynamics of nucleosome formation.Scientific reports · 2016Article
- Impact of methylation on the physical properties of DNA.Biophysical journal · 2012Article
- Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter.Biochimica et biophysica acta · 2012Article
- Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.Molecular and cellular biology · 2012Article
- Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes.Nucleic acids research · 2011Article
- Variety of genomic DNA patterns for nucleosome positioning.Genome research · 2011Article
- Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast.BMC genomics · 2011Article
- A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.Science (New York, N.Y.) · 2011Article
- Nucleosome distribution and linker DNA: connecting nuclear function to dynamic chromatin structure.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2011Review
- Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae.Epigenetics & chromatin · 2010Article
- ICM Web: the interactive chromatin modeling web server.Nucleic acids research · 2010Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
The contribution of histone-DNA interactions to nucleosome positioning in vivo is currently a matter of debate. We argue here that certain nucleosome positions, often in promoter regions, in yeast may be, at least in part, specified by the DNA sequence. In contrast other positions may be poorly specified. Positioning thus has both statistical and DNA-determined components. We further argue that the relative affinity of the octamer for different DNA sequences can vary and therefore the interaction of histones with the DNA is a 'tunable' property.
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Registered trials
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