Evidence map›Paper›PMID 20231268›Full record

ArticleThe Journal of biological chemistry2010

Metabolic response to iron deficiency in Saccharomyces cerevisiae.

Minoo Shakoury-Elizeh, Olga Protchenko, Alvin Berger, James Cox, Kenneth Gable, Teresa M Dunn, William A Prinz, Martin Bard, Caroline C Philpott

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 177 citations in OpenAlex.

  1. Article
  2. Article
  3. Impact ofmSphere · 2026
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  6. Tissue Iron Predicts Metformin Responsiveness in a Mouse Model and in Humans with Type 2 Diabetes.Diabetes, metabolic syndrome and obesity : targets and therapy · 2026
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Essential Role ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Minoo Shakoury-ElizehLiver Diseases Branch, NIDDK, National Institutes of Health, Bethesda, Maryland 20892, USA.
Olga Protchenko
Alvin Berger
James Cox
Kenneth Gable
Teresa M Dunn
William A Prinz
Martin Bard
Caroline C Philpott
National Institutes of Health · USUniformed Services University of the Health Sciences · USIndiana University – Purdue University Indianapolis · USMetabolon (United States) · USUniversity of Utah · US

Funding

Intracellular Lipid Trafficking and Organelle BiogenesisZIADK060004 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI PRINZ, WILLIAM · 2009 to 2022
$8.5M
Biogenesis of the endoplasmic reticulumZIADK060105 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI PRINZ, WILLIAM · 2009 to 2022
$8.5M
Crystallography CoreP30DK072437 · NIDDK · UNIVERSITY OF UTAH · PI KAPLAN, JERRY · 2005 to 2010
$4.0M
Serine Palmitoyl Transferase and Hereditary NeuropathyR01NS047717 · NINDS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI DUNN, TERESA M · 2004 to 2008
$2.1M
THE YEAST ERGOSTEROL PATHWAYR01GM062104 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BARD, MARTIN · 2000 to 2007
$1.6M
The Cellular Response To Iron Starvation And IntoxicationZIADK054507 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI PHILPOTT, CAROLINE · 2009 to 2010
$423k
NIDDK NIH HHS P30 DK072437NIGMS NIH HHS GM62104NIGMS NIH HHS R01 GM062104NINDS NIH HHS NS47717NINDS NIH HHS R01 NS047717
6 · The paper itself

Abstract

Iron is an essential cofactor for enzymes involved in numerous cellular processes, yet little is known about the impact of iron deficiency on cellular metabolism or iron proteins. Previous studies have focused on changes in transcript and proteins levels in iron-deficient cells, yet these changes may not reflect changes in transport activity or flux through a metabolic pathway. We analyzed the metabolomes and transcriptomes of yeast grown in iron-rich and iron-poor media to determine which biosynthetic processes are altered when iron availability falls. Iron deficiency led to changes in glucose metabolism, amino acid biosynthesis, and lipid biosynthesis that were due to deficiencies in specific iron-dependent enzymes. Iron-sulfur proteins exhibited loss of iron cofactors, yet amino acid synthesis was maintained. Ergosterol and sphingolipid biosynthetic pathways had blocks at points where heme and diiron enzymes function, whereas Ole1, the essential fatty acid desaturase, was resistant to iron depletion. Iron-deficient cells exhibited depletion of most iron enzyme activities, but loss of activity during iron deficiency did not consistently disrupt metabolism. Amino acid homeostasis was robust, but iron deficiency impaired lipid synthesis, altering the properties and functions of cellular membranes.

Indexed as

Gene Expression ProfilingIron DeficienciesMetabolomicsBiomarkersBlotting, WesternGene Expression Regulation, FungalGene Regulatory NetworksImmunoprecipitationOligonucleotide Array Sequence AnalysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsBiomarkersSaccharomyces cerevisiae Proteins

Identifiers

PMID20231268
PMCPMC2863190
OpenAlexW2028004137

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.