Evidence map›Paper›PMID 20229191›Full record

ArticlePlanta2010

Cloning and characterization of a novel gene that encodes (S)-beta-bisabolene synthase from ginger, Zingiber officinale.

Masaki Fujisawa, Hisashi Harada, Hiromichi Kenmoku, Satoru Mizutani, Norihiko Misawa

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Planta, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 42 citations in OpenAlex.

  1. Genome mining of cryptic bisabolenes that were biosynthesized by intramembrane terpene synthases fromPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
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  9. Functional expression of an orchid fragrance gene in Lactococcus lactis.International journal of molecular sciences · 2012
    Article
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Masaki FujisawaCentral Laboratories for Frontier Technology, Kirin Holdings Co. Ltd., i-BIRD, Nonoichi, Ishikawa, Japan.
Hisashi Harada
Hiromichi Kenmoku
Satoru Mizutani
Norihiko Misawa
Kirin (Japan) · JPIshikawa Prefectural University · JPKyowa Kirin (Japan) · JPTokushima Bunri University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ginger, Zingiber officinale Roscoe, contains a fragrant oil mainly composed of sesquiterpenes and monoterpenes. We isolated a cDNA that codes for a sesquiterpene synthase from young rhizomes of ginger, Z. officinale Roscoe, Japanese cultivar "Kintoki". The cDNA, designated ZoTps1, potentially encoded a protein that comprised 550 amino acid residues and exhibited 49-53% identity with those of the sesquiterpene synthases already isolated from the genus Zingiber. Recombinant Escherichia coli cells, in which ZoTps1 was coexpressed along with genes for D-mevalonate utilization, resulted in the production of a sesquiterpene (S)-beta-bisabolene exclusively with a D-mevalonolactone supplement. This result indicated that ZoTps1 was the (S)-beta-bisabolene synthase gene in ginger. ZoTPS1 was suggested to catalyze (S)-beta-bisabolene formation with the conversion of farnesyl diphosphate to nerolidyl diphosphate followed by the cyclization between position 1 and 6 carbons. The ZoTps1 transcript was detected in young rhizomes, but not in leaves, roots and mature rhizomes of the ginger "Kintoki".

Indexed as

Genes, PlantAlkyl and Aryl TransferasesAmino Acid SequenceBase SequenceCloning, MolecularDNA PrimersGas Chromatography-Mass SpectrometryGene Expression Regulation, EnzymologicGene Expression Regulation, PlantMolecular Sequence DataMonocyclic SesquiterpenesPhylogenyPolymerase Chain ReactionSequence Homology, Amino AcidSesquiterpenesZingiber officinaleAlkyl and Aryl Transferasesbeta-bisaboleneDNA PrimersMonocyclic SesquiterpenesSesquiterpenes

Identifiers

PMID20229191
OpenAlexW2042876017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.