Evidence map›Paper›PMID 20229092›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2010

The effect of detergents and lipids on the properties of the outer-membrane protein OmcA from Shewanella oneidensis.

Gregory J Bodemer, William A Antholine, Liana V Basova, Daad Saffarini, A Andrew Pacheco

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Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Gregory J BodemerDepartment of Biophysics, Medical College of Wisconsin, Milwaukee, USA.
William A Antholine
Liana V Basova
Daad Saffarini
A Andrew Pacheco
Medical College of Wisconsin · USUniversity of Wisconsin–Milwaukee · US

Funding

The metalloenzymes of ammonia-oxidizing bacteriaR15ES013955 · NIEHS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI PACHECO, A ANDREW · 2005 to 2005
$211k
NIBIB NIH HHS EB0011980NIEHS NIH HHS 1 R15 ES013955-01
6 · The paper itself

Abstract

The protein OmcA from the bacterium Shewanella oneidensis was purified to homogeneity, and characterized using UV-vis spectroelectrochemistry, EPR, and circular dichroism (far- and near-UV regions). EPR spectroscopy showed that many different c-type hemes are present in the protein: high-spin, low-spin, and highly anisotropic low-spin hemes were all detected. The protein was shown to bind tightly to artificial membranes (liposomes) composed of dioleoylphosphatidylglycerol and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (60:40 molar ratio), which mimic the natural environment. However, on the basis of the spectroscopic and electrochemical studies, binding to liposomes does not appear to significantly alter either the structure or the properties of OmcA. On the other hand, the electrochemical properties of OmcA are noticeably changed in the presence of the detergents used during the initial purification stages. In particular, the reduction potentials of two out of the ten OmcA hemes appear to shift in the presence of detergent, perhaps because these hemes are solvent-exposed.

Indexed as

Bacterial Outer Membrane ProteinsBinding SitesDetergentsElectrochemistryElectron Spin Resonance SpectroscopyLiposomesShewanellaSpectrophotometry, UltravioletBacterial Outer Membrane ProteinsDetergentsLiposomes

Identifiers

PMID20229092
OpenAlexW1970946313

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.