Evidence map›Paper›PMID 20228879›Full record

ArticlePhysica A2010

Solutions to a reduced Poisson-Nernst-Planck system and determination of reaction rates.

Bo Li, Benzhuo Lu, Zhongming Wang, J Andrew McCammon

Abstract read
In one paragraph

Article in Physica A, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Multiscale Multiphysics and Multidomain Models I: Basic Theory.Journal of theoretical & computational chemistry · 2013
    Article
  2. Progress in developing Poisson-Boltzmann equation solvers.Molecular based mathematical biology · 2013
    Article
  3. Variational multiscale models for charge transport.SIAM review. Society for Industrial and Applied Mathematics · 2012
    Article
  4. Poisson-Boltzmann-Nernst-Planck model.The Journal of chemical physics · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Bo LiDepartment of Mathematics, University of California, San Diego, 9500 Gilman Drive, Mail code: 0112. La Jolla, CA 92093-0112, USA.
Benzhuo Lu
Zhongming Wang
J Andrew McCammon

Funding

YEAST ER MOLECULAR CHAPERONE TRANSLOCATION: GENOME DATABANK HOMOLOGSP41RR006009 · NCRR · MELLON PITTS CORPORATION (MPC CORP) · PI KNOLL, ERIC · 1990 to 2011
$22.0M
Level-Set Variational Implicit-Solvent Approach to Biomolecular InteractionsR01GM096188 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LI, BO · 2010 to 2013
$1.2M
NCRR NIH HHS P41 RR006009NIGMS NIH HHS R01 GM096188
6 · The paper itself

Abstract

We study a reduced Poisson-Nernst-Planck (PNP) system for a charged spherical solute immersed in a solvent with multiple ionic or molecular species that are electrostatically neutralized in the far field. Some of these species are assumed to be in equilibrium. The concentrations of such species are described by the Boltzmann distributions that are further linearized. Others are assumed to be reactive, meaning that their concentrations vanish when in contact with the charged solute. We present both semi-analytical solutions and numerical iterative solutions to the underlying reduced PNP system, and calculate the reaction rate for the reactive species. We give a rigorous analysis on the convergence of our simple iteration algorithm. Our numerical results show the strong dependence of the reaction rates of the reactive species on the magnitude of its far field concentration as well as on the ionic strength of all the chemical species. We also find non-monotonicity of electrostatic potential in certain parameter regimes. The results for the reactive system and those for the non-reactive system are compared to show the significant differences between the two cases. Our approach provides a means of solving a PNP system which in general does not have a closed-form solution even with a special geometrical symmetry. Our findings can also be used to test other numerical methods in large-scale computational modeling of electro-diffusion in biological systems.

Identifiers

PMID20228879
PMCPMC2835320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.