ArticleJournal of biomedical informatics2011
Evolution of the Sequence Ontology terms and relationships.
Article in Journal of biomedical informatics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.
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Who cites it
56 citing papers in PubMed.
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- IMGT® at scale: FAIR, dynamic, and automated tools for immune locus analysis.Nucleic acids research · 2026Article
- Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations.bioRxiv : the preprint server for biology · 2025Article
- Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database.Database : the journal of biological databases and curation · 2025Article
- Semantics-enabled biomedical literature analytics.Journal of biomedical informatics · 2024Article
- The Gene Ontology knowledgebase in 2023.Genetics · 2023Review
- Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions.Journal of biomedical informatics · 2023Article
- Article
- The Human Disease Ontology 2022 update.Nucleic acids research · 2022Article
- Using FlyBase: A Database of Drosophila Genes and Genetics.Methods in molecular biology (Clifton, N.J.) · 2022Article
- CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research.Plants (Basel, Switzerland) · 2021Article
- GMO Genetic Elements Thesaurus (GMO-GET): a controlled vocabulary for the consensus designation of introduced or modified genetic elements in genetically modified organisms.BMC bioinformatics · 2021Article
- Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation.PLoS computational biology · 2020Article
- The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.Patterns (New York, N.Y.) · 2020Article
- The Gene Ontology Resource: 20 years and still GOing strong.Nucleic acids research · 2019Article
- TogoGenome/TogoStanza: modularized Semantic Web genome database.Database : the journal of biological databases and curation · 2019Article
- Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission.GigaScience · 2018Article
- ClinVar: improving access to variant interpretations and supporting evidence.Nucleic acids research · 2018Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
The Sequence Ontology is an established ontology, with a large user community, for the purpose of genomic annotation. We are reforming the ontology to provide better terms and relationships to describe the features of biological sequence, for both genomic and derived sequence. The SO is working within the guidelines of the OBO Foundry to provide interoperability between SO and the other related OBO ontologies. Here, we report changes and improvements made to SO including new relationships to better define the mereological, spatial and temporal aspects of biological sequence.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.