Evidence map›Paper›PMID 20221839›Full record

ArticleAmino acids2011

Quantum mechanical origin of the conformational preferences of 4-thiaproline and its S-oxides.

Amit Choudhary, Khian Hong Pua, Ronald T Raines

Abstract read
In one paragraph

Article in Amino acids, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The n→π* Interaction.Accounts of chemical research · 2017
    Article
  6. Article
  7. Article
  8. Signatures of n→π* interactions in proteins.Protein science : a publication of the Protein Society · 2014
    Article
  9. n→π* interactions in poly(lactic acid) suggest a role in protein folding.Chemical communications (Cambridge, England) · 2013
    Article
  10. Article
  11. Pyramidalization of a carbonyl C atom in (2S)-N-(seleno-acet-yl)proline methyl ester.Acta crystallographica. Section E, Structure reports online · 2013
    Article
  12. Article
  13. Article
  14. An evaluation of peptide-bond isosteres.Chembiochem : a European journal of chemical biology · 2011
    Review
  15. Article
  16. The aberrance of the 4S diastereomer of 4-hydroxyproline.Journal of the American Chemical Society · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Amit ChoudharyGraduate Program in Biophysics, University of Wisconsin-Madison, 53706, USA.
Khian Hong Pua
Ronald T Raines
University of Wisconsin–Madison · US

Funding

COLLAGEN STRUCTURE AND STABILITY IN VITRO AND IN VIVOR01AR044276 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI RAINES, RONALD T · 1996 to 2017
$5.6M
NIAMS NIH HHS R01 AR044276
6 · The paper itself

Abstract

The saturated ring and secondary amine of proline spawn equilibria between pyrrolidine ring puckers as well as peptide bond isomers. These conformational equilibria can be modulated by alterations to the chemical architecture of proline. For example, C(γ) in the pyrrolidine ring can be replaced with sulfur, which can be oxidized either stereoselectively to yield diastereomeric S-oxides or completely to yield a sulfone. Here, the thiazolidine ring and peptide bond conformations of 4-thiaproline and its S-oxides were analyzed in an Ac-Xaa-OMe system using NMR spectroscopy, X-ray crystallography, and hybrid density functional theory. The results indicate that the ring pucker of the S-oxides is governed by the gauche effect, and the prolyl peptide bond conformation is determined by the strength of the n → π* interaction between the amide oxygen and the ester carbonyl group. These findings, which are consistent with those of isologous 4-hydroxyprolines and 4-fluoroprolines, substantiate the importance of electron delocalization in amino acid conformation.

Indexed as

Quantum TheoryCrystallography, X-RayMagnetic Resonance SpectroscopyModels, MolecularMolecular ConformationOxidesProlineOxidesProline

Identifiers

PMID20221839
PMCPMC2910815
OpenAlexW2024714975

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.