Evidence map›Paper›PMID 20221737›Full record

ArticleJournal of microbiology (Seoul, Korea)2010

Comparative analysis of the genomes of Bombyx mandarina and Bombyx mori nucleopolyhedroviruses.

Yi-Peng Xu, Zheng-Pei Ye, Chang-Ying Niu, Yan-Yuan Bao, Wen-Bing Wang, Wei-De Shen, Chuan-Xi Zhang

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Genomic Sequence Analysis ofIndian journal of microbiology · 2021
    Article
  2. Article
  3. Gene Expression Pattern and Regulatory Network ofInternational journal of genomics · 2019
    Article
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  13. Baculovirus: molecular insights on their diversity and conservation.International journal of evolutionary biology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yi-Peng XuMinistry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Zhejiang University, Hangzhou, P R China.
Zheng-Pei Ye
Chang-Ying Niu
Yan-Yuan Bao
Wen-Bing Wang
Wei-De Shen
Chuan-Xi Zhang
Huazhong Agricultural University · CNSuzhou University of Science and Technology · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Bombyx mandarina nucleopolyhedrovirus (BomaNPV) S1 strain can infect the silkworm, Bombyx mori, but is significantly less virulent than B. mori nucleopolyhedrovirus (BmNPV) T3 strain. The complete nucleotide sequence of the S1 strain of BomaNPV was determined and compared with the BmNPV T3 strain. The circular, double stranded DNA genome of the S1 strain was 126,770 nucleotides long (GenBank accession no. FJ882854), with a G+C content of 40.23%. The genome contained 133 potential ORFs. Most of the putative proteins were more than 96% identical to homologs in the BmNPV T3 strain, except for bro-a, lef-12, bro-c, and bro-d. Compared with the BmNPV T3 strain, however, this genome did not encode the bro-b and bro-e genes. In addition, hr1 lacked two repeat units, while hr2L, hr2R, hr3, hr4L, hr4R, and hr5 were similar to the corresponding hrs in the T3 strain. The sequence strongly suggested that BomaNPV and BmNPV are variants with each other, and supported the idea that baculovirus strain heterogeneity may often be caused by variation in the hrs and bro genes.

Indexed as

Genome, InsectAmino Acid SequenceAnimalsBombyxGenes, InsectLarvaLethal Dose 50Membrane ProteinsMolecular Sequence DataNucleopolyhedrovirusesOpen Reading FramesPhosphoproteinsSequence AlignmentSequence Analysis, DNAViral ProteinsAcOrf-20 protein, Autographa californica nucleopolyhedrovirusMembrane ProteinsPhosphoproteinsViral Proteins

Identifiers

PMID20221737
OpenAlexW2036520039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.