Evidence map›Paper›PMID 20221604›Full record

ArticleCurrent microbiology2010

P450 redox enzymes in the white rot fungus Phanerochaete chrysosporium: gene transcription, heterologous expression, and activity analysis on the purified proteins.

Venkataramanan Subramanian, Harshavardhan Doddapaneni, Khajamohiddin Syed, Jagjit S Yadav

Open access · greenAbstract read
In one paragraph

Article in Current microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Venkataramanan SubramanianDepartment of Environmental Health, University of Cincinnati, Cincinnati, OH 45267, USA.
Harshavardhan Doddapaneni
Khajamohiddin Syed
Jagjit S Yadav
University of Cincinnati · USUniversity of Iowa · US

Funding

FUNGAL P450 SYSTEMS IN BIODEGRADATION OF HIGHER PAHS-R01ES15543-01R01ES015543 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2008 to 2011
$1.1M
XENOBIOTIC-OXIDIZING P450 SYSTEM IN A WHITE ROT FUNGUSR01ES010210 · NIEHS · UNIVERSITY OF CINCINNATI · PI YADAV, JAGJIT S · 2001 to 2003
$689k
NIEHS NIH HHS ES015543NIEHS NIH HHS ES10210NIEHS NIH HHS R01 ES010210NIEHS NIH HHS R01 ES015543
6 · The paper itself

Abstract

With an aim to understand the cytochrome P450 enzyme system in the white rot fungus Phanerochaete chrysosporium, here we report molecular characterization of its P450 redox proteins including the primary P450 oxidoreductase (POR) and two alternate P450 redox proteins cytochrome b5 (cyt b5) and cytochrome b5 reductase (cyt b5r) in terms of transcriptional regulation and heterologous expression. The transcript abundance followed the order POR > cyt b5r > cyt b5. Interestingly, the three genes showed an overall higher expression in the defined carbon-limited cultures with low nitrogen (LN) or high nitrogen (HN) versus the carbon-rich malt extract (ME) cultures. cDNA cloning and analysis revealed the following deduced protein characteristics: cyt b5 (238 amino acids, 25.38 kDa) and cyt b5r (321 amino acids, 35.52 kDa). Phylogenetic analysis revealed that the cloned cyt b5 belongs to a novel class of fungal cyt b5-like proteins. The two proteins cyt b5 and cyt b5r were heterologously expressed in E. coli and purified using affinity-based purification in an active form. The POR was heterologously expressed in Saccharomyces cerevisiae and was also purified in active form as evidenced by its cytochrome c reduction activity. This is the first report on cloning, heterologous expression, and purification of the alternate redox proteins cyt b5 and cyt b5r in E. coli and on yeast expression of POR from this model white rot fungus.

Indexed as

Fungal ProteinsCarbonCloning, MolecularCulture MediaCytochrome-B(5) ReductaseCytochrome P-450 Enzyme SystemCytochromes b5DNA, ComplementaryEnvironmental PollutantsEscherichia coliGene DuplicationGene ExpressionGenome, FungalLigninMolecular Sequence DataNADPH-Ferrihemoprotein ReductaseCarbonCulture MediaCytochrome-B(5) ReductaseCytochrome P-450 Enzyme SystemCytochromes b5DNA, ComplementaryEnvironmental PollutantsFungal ProteinsLigninNADPH-Ferrihemoprotein ReductaseNitrogenRecombinant Proteins

Identifiers

PMID20221604
PMCPMC3121562
OpenAlexW2066797176

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.